Strain Fitness in Escherichia coli ECRC102 around NIAGMN_27480

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNIAGMN_27470 and NIAGMN_27475 are separated by 186 nucleotidesNIAGMN_27475 and eCs1768 are separated by 31 nucleotideseCs1768 and NIAGMN_27485 overlap by 29 nucleotidesNIAGMN_27485 and NIAGMN_27490 overlap by 17 nucleotidesNIAGMN_27490 and hipB are separated by 76 nucleotides NIAGMN_27470: NIAGMN_27470 - DNA-binding protein, at 5,326,431 to 5,327,012 _27470 NIAGMN_27475: NIAGMN_27475 - replication protein, at 5,327,199 to 5,327,621 _27475 NIAGMN_27480: eCs1768 - DNA-binding protein, at 5,327,653 to 5,328,693 eCs1768 NIAGMN_27485: NIAGMN_27485 - Putative bacterial toxin ydaT, at 5,328,665 to 5,329,216 _27485 NIAGMN_27490: NIAGMN_27490 - transcriptional regulator, at 5,329,200 to 5,329,427 _27490 NIAGMN_27495: hipB - transcriptional regulator, at 5,329,504 to 5,329,911 hipB Position (kb) 5327 5328 5329Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5327.456 kb on - strand, within NIAGMN_27475at 5327.889 kb on + strand, within eCs1768at 5328.382 kb on + strand, within eCs1768at 5328.405 kb on - strand, within eCs1768at 5328.676 kb on + strandat 5328.732 kb on + strand, within NIAGMN_27485at 5328.732 kb on + strand, within NIAGMN_27485at 5328.732 kb on + strand, within NIAGMN_27485at 5328.879 kb on + strand, within NIAGMN_27485at 5328.879 kb on + strand, within NIAGMN_27485at 5328.880 kb on - strand, within NIAGMN_27485at 5328.983 kb on - strand, within NIAGMN_27485

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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5,327,456 - NIAGMN_27475 0.61 -0.6
5,327,889 + eCs1768 NIAGMN_27480 0.23 +1.3
5,328,382 + eCs1768 NIAGMN_27480 0.70 +1.0
5,328,405 - eCs1768 NIAGMN_27480 0.72 +3.3
5,328,676 + -2.0
5,328,732 + NIAGMN_27485 0.12 -0.3
5,328,732 + NIAGMN_27485 0.12 -0.6
5,328,732 + NIAGMN_27485 0.12 +0.7
5,328,879 + NIAGMN_27485 0.39 -0.2
5,328,879 + NIAGMN_27485 0.39 -0.3
5,328,880 - NIAGMN_27485 0.39 -0.3
5,328,983 - NIAGMN_27485 0.58 +1.1

Or see this region's nucleotide sequence