Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NIAGMN_27440 and NIAGMN_27445 are separated by 1 nucleotides NIAGMN_27445 and NIAGMN_27450 are separated by 69 nucleotides NIAGMN_27450 and hokD1 are separated by 220 nucleotides hokD1 and paa are separated by 278 nucleotides
NIAGMN_27440: NIAGMN_27440 - DUF968 domain-containing protein, at 5,322,448 to 5,323,494
_27440
NIAGMN_27445: NIAGMN_27445 - hypothetical protein, at 5,323,496 to 5,323,774
_27445
NIAGMN_27450: NIAGMN_27450 - Hypothetical rem protein, at 5,323,844 to 5,324,101
_27450
NIAGMN_27455: hokD1 - Protein HokD, at 5,324,322 to 5,324,534
hokD1
NIAGMN_27465: paa - outer membrane adhesin Paa, at 5,324,813 to 5,325,571
paa
Position (kb) 5324
5325 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 5324.009 kb on - strand, within NIAGMN_27450 at 5324.519 kb on + strand at 5324.519 kb on + strand at 5324.521 kb on + strand at 5324.521 kb on + strand at 5324.534 kb on + strand at 5324.534 kb on + strand at 5324.535 kb on - strand at 5324.536 kb on + strand at 5324.536 kb on + strand at 5324.536 kb on + strand at 5324.722 kb on - strand at 5324.918 kb on + strand, within paa at 5324.924 kb on - strand, within paa at 5325.116 kb on + strand, within paa at 5325.504 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 5,324,009 - NIAGMN_27450 0.64 +1.5 5,324,519 + -0.6 5,324,519 + -0.3 5,324,521 + -0.4 5,324,521 + +0.8 5,324,534 + +0.9 5,324,534 + -1.3 5,324,535 - -0.3 5,324,536 + +0.2 5,324,536 + -0.4 5,324,536 + -0.6 5,324,722 - +1.0 5,324,918 + paa NIAGMN_27465 0.14 +0.9 5,324,924 - paa NIAGMN_27465 0.15 -2.6 5,325,116 + paa NIAGMN_27465 0.40 +1.6 5,325,504 + +3.8
Or see this region's nucleotide sequence