Strain Fitness in Escherichia coli ECRC102 around NIAGMN_27065

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNIAGMN_27050 and NIAGMN_27055 are separated by 278 nucleotidesNIAGMN_27055 and NIAGMN_27065 are separated by 188 nucleotidesNIAGMN_27065 and NIAGMN_27070 are separated by 115 nucleotidesNIAGMN_27070 and NIAGMN_27075 overlap by 4 nucleotidesNIAGMN_27075 and NIAGMN_27080 are separated by 35 nucleotides NIAGMN_27050: NIAGMN_27050 - hypothetical protein, at 5,263,706 to 5,263,873 _27050 NIAGMN_27055: NIAGMN_27055 - protein hokC, at 5,264,152 to 5,264,364 _27055 NIAGMN_27065: NIAGMN_27065 - hypothetical protein, at 5,264,553 to 5,264,657 _27065 NIAGMN_27070: NIAGMN_27070 - DUF551 domain-containing protein, at 5,264,773 to 5,265,135 _27070 NIAGMN_27075: NIAGMN_27075 - hypothetical protein, at 5,265,132 to 5,265,503 _27075 NIAGMN_27080: NIAGMN_27080 - hypothetical protein, at 5,265,539 to 5,265,751 _27080 Position (kb) 5264 5265Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 5263.645 kb on - strandat 5263.689 kb on + strandat 5263.693 kb on - strandat 5263.700 kb on + strandat 5263.708 kb on - strandat 5263.729 kb on - strand, within NIAGMN_27050at 5263.769 kb on - strand, within NIAGMN_27050at 5263.828 kb on - strand, within NIAGMN_27050at 5263.892 kb on + strandat 5263.927 kb on - strandat 5263.944 kb on - strandat 5263.944 kb on - strandat 5264.027 kb on - strandat 5264.027 kb on - strandat 5264.057 kb on - strandat 5264.364 kb on + strandat 5264.364 kb on + strandat 5264.364 kb on + strandat 5264.368 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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5,263,645 - -0.3
5,263,689 + -0.7
5,263,693 - -0.8
5,263,700 + -2.4
5,263,708 - -1.0
5,263,729 - NIAGMN_27050 0.14 +1.7
5,263,769 - NIAGMN_27050 0.38 +0.1
5,263,828 - NIAGMN_27050 0.73 +0.9
5,263,892 + +1.9
5,263,927 - -4.0
5,263,944 - +5.3
5,263,944 - +2.9
5,264,027 - +0.4
5,264,027 - -0.1
5,264,057 - -1.1
5,264,364 + +0.6
5,264,364 + +0.2
5,264,364 + +0.0
5,264,368 + +0.6

Or see this region's nucleotide sequence