Strain Fitness in Escherichia coli ECRC102 around NIAGMN_27010

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNIAGMN_27000 and NIAGMN_27005 are separated by 4 nucleotidesNIAGMN_27005 and NIAGMN_27010 are separated by 76 nucleotidesNIAGMN_27010 and NIAGMN_27015 are separated by 356 nucleotides NIAGMN_27000: NIAGMN_27000 - SAR-endolysin, at 5,255,564 to 5,256,097 _27000 NIAGMN_27005: NIAGMN_27005 - holin, at 5,256,102 to 5,256,317 _27005 NIAGMN_27010: NIAGMN_27010 - DUF826 domain-containing protein, at 5,256,394 to 5,256,666 _27010 NIAGMN_27015: NIAGMN_27015 - sialate O-acetylesterase, at 5,257,023 to 5,258,969 _27015 Position (kb) 5256 5257Strain fitness (log2 ratio) -1 0 1at 5256.149 kb on - strand, within NIAGMN_27005at 5256.953 kb on + strandat 5256.956 kb on + strandat 5256.956 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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5,256,149 - NIAGMN_27005 0.22 +0.2
5,256,953 + -0.2
5,256,956 + +0.3
5,256,956 + -1.7

Or see this region's nucleotide sequence