Strain Fitness in Escherichia coli ECRC102 around NIAGMN_26710

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyciT and osmB are separated by 268 nucleotidesosmB and yciH are separated by 125 nucleotidesyciH and pyrF overlap by 1 nucleotides NIAGMN_26705: yciT - DNA-binding transcriptional regulator YciT, at 5,201,459 to 5,202,208 yciT NIAGMN_26710: osmB - osmotically-inducible lipoprotein OsmB, at 5,202,477 to 5,202,695 osmB NIAGMN_26715: yciH - stress response translation initiation inhibitor YciH, at 5,202,821 to 5,203,147 yciH NIAGMN_26720: pyrF - orotidine-5'-phosphate decarboxylase, at 5,203,147 to 5,203,944 pyrF Position (kb) 5202 5203Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 5201.632 kb on + strand, within yciTat 5201.668 kb on + strand, within yciTat 5202.431 kb on + strandat 5202.432 kb on - strandat 5202.803 kb on + strandat 5203.119 kb on + strandat 5203.120 kb on - strandat 5203.233 kb on + strand, within pyrFat 5203.234 kb on - strand, within pyrFat 5203.235 kb on + strand, within pyrF

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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5,201,632 + yciT NIAGMN_26705 0.23 -1.7
5,201,668 + yciT NIAGMN_26705 0.28 -0.6
5,202,431 + -0.1
5,202,432 - -0.3
5,202,803 + -0.0
5,203,119 + -1.3
5,203,120 - -1.4
5,203,233 + pyrF NIAGMN_26720 0.11 -1.3
5,203,234 - pyrF NIAGMN_26720 0.11 -3.9
5,203,235 + pyrF NIAGMN_26720 0.11 -2.9

Or see this region's nucleotide sequence