Strain Fitness in Escherichia coli ECRC102 around NIAGMN_26200

Experiment: L-Arabinose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntNIAGMN_26195 and NIAGMN_26200 overlap by 1 nucleotidesNIAGMN_26200 and dcm overlap by 33 nucleotides NIAGMN_26195: NIAGMN_26195 - ATP-binding protein, at 5,108,023 to 5,109,414 _26195 NIAGMN_26200: NIAGMN_26200 - hypothetical protein, at 5,109,414 to 5,110,403 _26200 NIAGMN_26205: dcm - DNA-cytosine methylase, at 5,110,371 to 5,111,522 dcm Position (kb) 5109 5110 5111Strain fitness (log2 ratio) -3 -2 -1 0 1at 5108.863 kb on + strand, within NIAGMN_26195at 5108.984 kb on + strand, within NIAGMN_26195at 5110.303 kb on - strand, within NIAGMN_26200

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
remove
5,108,863 + NIAGMN_26195 0.60 -2.4
5,108,984 + NIAGMN_26195 0.69 +0.0
5,110,303 - NIAGMN_26200 0.90 -3.1

Or see this region's nucleotide sequence