Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NIAGMN_26105 and NIAGMN_26110 are separated by 131 nucleotides NIAGMN_26110 and NIAGMN_26115 are separated by 338 nucleotides NIAGMN_26115 and NIAGMN_26120 are separated by 145 nucleotides NIAGMN_26120 and NIAGMN_26125 overlap by 4 nucleotides
NIAGMN_26105: NIAGMN_26105 - DUF3950 domain-containing protein, at 5,098,702 to 5,098,902
_26105
NIAGMN_26110: NIAGMN_26110 - Protein TonB, at 5,099,034 to 5,099,360
_26110
NIAGMN_26115: NIAGMN_26115 - Endopeptidase of prophage CP-933N, at 5,099,699 to 5,100,157
_26115
NIAGMN_26120: NIAGMN_26120 - Prophage protein, at 5,100,303 to 5,100,398
_26120
NIAGMN_26125: NIAGMN_26125 - Phage antirepressor protein KilAC domain-containing protein, at 5,100,395 to 5,101,090
_26125
Position (kb) 5099
5100
5101 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5098.702 kb on - strand at 5099.032 kb on - strand at 5099.297 kb on + strand, within NIAGMN_26110 at 5100.014 kb on - strand, within NIAGMN_26115 at 5100.886 kb on - strand, within NIAGMN_26125 at 5101.021 kb on + strand at 5101.058 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 5,098,702 - -0.3 5,099,032 - -1.1 5,099,297 + NIAGMN_26110 0.80 -0.7 5,100,014 - NIAGMN_26115 0.69 -3.7 5,100,886 - NIAGMN_26125 0.71 -0.4 5,101,021 + +0.6 5,101,058 + -2.6
Or see this region's nucleotide sequence