Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NIAGMN_25805 and yncP are separated by 17 nucleotides yncP and ydcA are separated by 25 nucleotides ydcA and cybB are separated by 244 nucleotides cybB and gap are separated by 188 nucleotides
NIAGMN_25805: NIAGMN_25805 - Regulatory protein mokB, at 5,036,263 to 5,036,430
_25805
NIAGMN_25810: yncP - Protein YncP, at 5,036,448 to 5,036,516
yncP
NIAGMN_25815: ydcA - Uncharacterized protein YdcA, at 5,036,542 to 5,036,715
ydcA
NIAGMN_25825: cybB - cytochrome b561, at 5,036,960 to 5,037,490
cybB
NIAGMN_25830: gap - type I glyceraldehyde-3-phosphate dehydrogenase, at 5,037,679 to 5,038,680
gap
Position (kb) 5036
5037
5038 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5035.983 kb on + strand at 5035.993 kb on + strand at 5036.027 kb on + strand at 5036.163 kb on + strand at 5036.406 kb on - strand, within NIAGMN_25805 at 5036.468 kb on + strand, within yncP at 5036.572 kb on - strand, within ydcA at 5036.572 kb on - strand, within ydcA at 5036.574 kb on + strand, within ydcA at 5036.574 kb on + strand, within ydcA at 5036.575 kb on - strand, within ydcA at 5036.575 kb on - strand, within ydcA at 5036.667 kb on - strand, within ydcA at 5036.718 kb on - strand at 5036.741 kb on + strand at 5036.836 kb on - strand at 5036.896 kb on - strand at 5036.951 kb on - strand at 5037.098 kb on - strand, within cybB at 5037.175 kb on - strand, within cybB at 5037.276 kb on - strand, within cybB at 5037.277 kb on + strand, within cybB at 5037.306 kb on - strand, within cybB at 5037.830 kb on - strand, within gap at 5038.135 kb on - strand, within gap at 5038.213 kb on + strand, within gap
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 5,035,983 + +2.1 5,035,993 + -0.0 5,036,027 + -0.1 5,036,163 + +0.4 5,036,406 - NIAGMN_25805 0.85 -2.9 5,036,468 + yncP NIAGMN_25810 0.29 +0.7 5,036,572 - ydcA NIAGMN_25815 0.17 +0.2 5,036,572 - ydcA NIAGMN_25815 0.17 +1.2 5,036,574 + ydcA NIAGMN_25815 0.18 -1.1 5,036,574 + ydcA NIAGMN_25815 0.18 -1.7 5,036,575 - ydcA NIAGMN_25815 0.19 -1.4 5,036,575 - ydcA NIAGMN_25815 0.19 +0.7 5,036,667 - ydcA NIAGMN_25815 0.72 +1.5 5,036,718 - -2.2 5,036,741 + -0.3 5,036,836 - +0.5 5,036,896 - -1.6 5,036,951 - +2.1 5,037,098 - cybB NIAGMN_25825 0.26 +2.5 5,037,175 - cybB NIAGMN_25825 0.40 -0.4 5,037,276 - cybB NIAGMN_25825 0.60 +0.7 5,037,277 + cybB NIAGMN_25825 0.60 +0.4 5,037,306 - cybB NIAGMN_25825 0.65 +1.5 5,037,830 - gap NIAGMN_25830 0.15 -1.4 5,038,135 - gap NIAGMN_25830 0.46 -0.1 5,038,213 + gap NIAGMN_25830 0.53 -0.7
Or see this region's nucleotide sequence