Strain Fitness in Escherichia coli ECRC102 around NIAGMN_25345

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNIAGMN_25340 and fimA are separated by 973 nucleotidesfimA and fimC are separated by 360 nucleotides NIAGMN_25340: NIAGMN_25340 - Protein HipA, at 4,929,479 to 4,930,501 _25340 NIAGMN_25345: fimA - type 1 fimbrial major subunit FimA, at 4,931,475 to 4,932,038 fimA NIAGMN_25350: fimC - fimbrial chaperone protein FimC, at 4,932,399 to 4,933,109 fimC Position (kb) 4931 4932 4933Strain fitness (log2 ratio) -2 -1 0 1at 4930.929 kb on - strandat 4931.260 kb on + strandat 4931.322 kb on + strandat 4931.691 kb on - strand, within fimAat 4931.763 kb on - strand, within fimAat 4931.789 kb on + strand, within fimAat 4931.810 kb on + strand, within fimAat 4932.454 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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4,930,929 - -2.4
4,931,260 + -0.3
4,931,322 + -0.4
4,931,691 - fimA NIAGMN_25345 0.38 +0.9
4,931,763 - fimA NIAGMN_25345 0.51 -0.6
4,931,789 + fimA NIAGMN_25345 0.56 -2.0
4,931,810 + fimA NIAGMN_25345 0.59 +0.1
4,932,454 + +0.0

Or see this region's nucleotide sequence