Strain Fitness in Escherichia coli ECRC102 around NIAGMN_25205

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntftrA and pspE are separated by 94 nucleotidespspE and ydeE are separated by 40 nucleotidesydeE and eamA are separated by 194 nucleotides NIAGMN_25195: ftrA - transcriptional regulator FtrA, at 4,897,469 to 4,898,440 ftrA NIAGMN_25200: pspE - rhodanese, at 4,898,535 to 4,898,930 pspE NIAGMN_25205: ydeE - efflux MFS transporter YdeE, at 4,898,971 to 4,900,158 ydeE NIAGMN_25210: eamA - O-acetylserine/cysteine exporter, at 4,900,353 to 4,901,252 eamA Position (kb) 4898 4899 4900 4901Strain fitness (log2 ratio) -2 -1 0 1 2at 4898.004 kb on - strand, within ftrAat 4898.282 kb on + strand, within ftrAat 4898.391 kb on - strandat 4898.400 kb on + strandat 4898.541 kb on + strandat 4899.016 kb on + strandat 4899.263 kb on - strand, within ydeEat 4899.465 kb on - strand, within ydeEat 4900.150 kb on + strandat 4900.243 kb on + strandat 4900.255 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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4,898,004 - ftrA NIAGMN_25195 0.55 -1.0
4,898,282 + ftrA NIAGMN_25195 0.84 +0.2
4,898,391 - +1.8
4,898,400 + -1.5
4,898,541 + +0.7
4,899,016 + +1.6
4,899,263 - ydeE NIAGMN_25205 0.25 -0.1
4,899,465 - ydeE NIAGMN_25205 0.42 -2.4
4,900,150 + +0.3
4,900,243 + -0.3
4,900,255 - +0.4

Or see this region's nucleotide sequence