Strain Fitness in Escherichia coli ECRC102 around NIAGMN_24510

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNIAGMN_24495 and NIAGMN_24505 are separated by 188 nucleotidesNIAGMN_24505 and NIAGMN_24510 are separated by 447 nucleotidesNIAGMN_24510 and rusA are separated by 12 nucleotidesrusA and NIAGMN_24520 overlap by 4 nucleotides NIAGMN_24495: NIAGMN_24495 - hypothetical protein, at 4,784,569 to 4,784,673 _24495 NIAGMN_24505: NIAGMN_24505 - protein hokC, at 4,784,862 to 4,785,074 _24505 NIAGMN_24510: NIAGMN_24510 - DUF968 domain-containing protein, at 4,785,522 to 4,786,571 _24510 NIAGMN_24515: rusA - Endodeoxyribonuclease RusA, at 4,786,584 to 4,786,958 rusA NIAGMN_24520: NIAGMN_24520 - antitermination protein, at 4,786,955 to 4,787,776 _24520 Position (kb) 4785 4786 4787Strain fitness (log2 ratio) -1 0 1 2at 4784.941 kb on + strand, within NIAGMN_24505at 4784.941 kb on + strand, within NIAGMN_24505

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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4,784,941 + NIAGMN_24505 0.37 +1.8
4,784,941 + NIAGMN_24505 0.37 +2.2

Or see this region's nucleotide sequence