Strain Fitness in Escherichia coli ECRC102 around NIAGMN_23970

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntycdY and ycdZ are separated by 71 nucleotidesycdZ and cgsG are separated by 63 nucleotidescgsG and cgsF are separated by 26 nucleotidescgsF and cgsE are separated by 24 nucleotidescgsE and cgsD are separated by 4 nucleotides NIAGMN_23960: ycdY - molecular chaperone YcdY, at 4,692,522 to 4,693,076 ycdY NIAGMN_23965: ycdZ - Inner membrane protein YcdZ, at 4,693,148 to 4,693,669 ycdZ NIAGMN_23970: cgsG - curli production assembly/transport protein CsgG, at 4,693,733 to 4,694,566 cgsG NIAGMN_23975: cgsF - curli production assembly/transport protein CsgF, at 4,694,593 to 4,695,009 cgsF NIAGMN_23980: cgsE - curli production assembly/transport protein CsgE, at 4,695,034 to 4,695,423 cgsE NIAGMN_23985: cgsD - transcriptional regulator CsgD, at 4,695,428 to 4,696,078 cgsD Position (kb) 4693 4694 4695Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4693.185 kb on + strandat 4693.186 kb on - strandat 4693.257 kb on + strand, within ycdZat 4693.378 kb on + strand, within ycdZat 4693.379 kb on - strand, within ycdZat 4693.422 kb on - strand, within ycdZat 4693.456 kb on + strand, within ycdZat 4693.457 kb on - strand, within ycdZat 4693.551 kb on + strand, within ycdZat 4693.551 kb on + strand, within ycdZat 4693.575 kb on + strand, within ycdZat 4693.756 kb on + strandat 4693.757 kb on - strandat 4694.162 kb on - strand, within cgsGat 4694.425 kb on + strand, within cgsGat 4695.410 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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4,693,185 + -1.3
4,693,186 - -2.5
4,693,257 + ycdZ NIAGMN_23965 0.21 +0.6
4,693,378 + ycdZ NIAGMN_23965 0.44 +1.2
4,693,379 - ycdZ NIAGMN_23965 0.44 -1.5
4,693,422 - ycdZ NIAGMN_23965 0.52 +0.2
4,693,456 + ycdZ NIAGMN_23965 0.59 +1.7
4,693,457 - ycdZ NIAGMN_23965 0.59 -1.9
4,693,551 + ycdZ NIAGMN_23965 0.77 +2.9
4,693,551 + ycdZ NIAGMN_23965 0.77 +0.9
4,693,575 + ycdZ NIAGMN_23965 0.82 -0.0
4,693,756 + -0.0
4,693,757 - -1.7
4,694,162 - cgsG NIAGMN_23970 0.51 +1.0
4,694,425 + cgsG NIAGMN_23970 0.83 -0.8
4,695,410 - +1.1

Or see this region's nucleotide sequence