Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ycdY and ycdZ are separated by 71 nucleotides ycdZ and cgsG are separated by 63 nucleotides cgsG and cgsF are separated by 26 nucleotides cgsF and cgsE are separated by 24 nucleotides cgsE and cgsD are separated by 4 nucleotides
NIAGMN_23960: ycdY - molecular chaperone YcdY, at 4,692,522 to 4,693,076
ycdY
NIAGMN_23965: ycdZ - Inner membrane protein YcdZ, at 4,693,148 to 4,693,669
ycdZ
NIAGMN_23970: cgsG - curli production assembly/transport protein CsgG, at 4,693,733 to 4,694,566
cgsG
NIAGMN_23975: cgsF - curli production assembly/transport protein CsgF, at 4,694,593 to 4,695,009
cgsF
NIAGMN_23980: cgsE - curli production assembly/transport protein CsgE, at 4,695,034 to 4,695,423
cgsE
NIAGMN_23985: cgsD - transcriptional regulator CsgD, at 4,695,428 to 4,696,078
cgsD
Position (kb)
4693
4694
4695 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4693.185 kb on + strand at 4693.186 kb on - strand at 4693.257 kb on + strand, within ycdZ at 4693.378 kb on + strand, within ycdZ at 4693.379 kb on - strand, within ycdZ at 4693.422 kb on - strand, within ycdZ at 4693.456 kb on + strand, within ycdZ at 4693.457 kb on - strand, within ycdZ at 4693.551 kb on + strand, within ycdZ at 4693.551 kb on + strand, within ycdZ at 4693.575 kb on + strand, within ycdZ at 4693.756 kb on + strand at 4693.757 kb on - strand at 4694.162 kb on - strand, within cgsG at 4694.425 kb on + strand, within cgsG at 4695.410 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 4,693,185 + -1.3 4,693,186 - -2.5 4,693,257 + ycdZ NIAGMN_23965 0.21 +0.6 4,693,378 + ycdZ NIAGMN_23965 0.44 +1.2 4,693,379 - ycdZ NIAGMN_23965 0.44 -1.5 4,693,422 - ycdZ NIAGMN_23965 0.52 +0.2 4,693,456 + ycdZ NIAGMN_23965 0.59 +1.7 4,693,457 - ycdZ NIAGMN_23965 0.59 -1.9 4,693,551 + ycdZ NIAGMN_23965 0.77 +2.9 4,693,551 + ycdZ NIAGMN_23965 0.77 +0.9 4,693,575 + ycdZ NIAGMN_23965 0.82 -0.0 4,693,756 + -0.0 4,693,757 - -1.7 4,694,162 - cgsG NIAGMN_23970 0.51 +1.0 4,694,425 + cgsG NIAGMN_23970 0.83 -0.8 4,695,410 - +1.1
Or see this region's nucleotide sequence