Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ydeI and NIAGMN_23640 are separated by 119 nucleotides NIAGMN_23640 and NIAGMN_23650 are separated by 233 nucleotides NIAGMN_23650 and NIAGMN_23655 overlap by 1 nucleotides NIAGMN_23655 and NIAGMN_23660 are separated by 20 nucleotides NIAGMN_23660 and NIAGMN_23665 overlap by 14 nucleotides
NIAGMN_23635: ydeI - TIGR00156 family protein, at 4,624,804 to 4,625,148
ydeI
NIAGMN_23640: NIAGMN_23640 - protein hokC, at 4,625,268 to 4,625,480
_23640
NIAGMN_23650: NIAGMN_23650 - tRNA-synt-1g domain-containing protein, at 4,625,714 to 4,626,109
_23650
NIAGMN_23655: NIAGMN_23655 - Uncharacterized protein H0156, at 4,626,109 to 4,626,768
_23655
NIAGMN_23660: NIAGMN_23660 - Ead/Ea22-like protein, at 4,626,789 to 4,627,007
_23660
NIAGMN_23665: NIAGMN_23665 - DUF4752 domain-containing protein, at 4,626,994 to 4,627,278
_23665
Position (kb) 4625
4626
4627 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4624.829 kb on - strand at 4624.916 kb on - strand, within ydeI at 4625.290 kb on - strand, within NIAGMN_23640 at 4625.657 kb on - strand at 4625.680 kb on - strand at 4625.766 kb on - strand, within NIAGMN_23650 at 4625.766 kb on - strand, within NIAGMN_23650 at 4625.917 kb on - strand, within NIAGMN_23650 at 4626.033 kb on - strand, within NIAGMN_23650 at 4626.089 kb on - strand at 4626.311 kb on - strand, within NIAGMN_23655 at 4626.377 kb on + strand, within NIAGMN_23655 at 4626.378 kb on - strand, within NIAGMN_23655 at 4626.521 kb on + strand, within NIAGMN_23655 at 4626.728 kb on + strand at 4626.809 kb on - strand at 4626.809 kb on - strand at 4626.839 kb on + strand, within NIAGMN_23660 at 4627.027 kb on + strand, within NIAGMN_23665 at 4627.028 kb on - strand, within NIAGMN_23665
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 4,624,829 - +2.5 4,624,916 - ydeI NIAGMN_23635 0.32 +1.1 4,625,290 - NIAGMN_23640 0.10 -3.6 4,625,657 - +1.7 4,625,680 - +2.4 4,625,766 - NIAGMN_23650 0.13 -3.4 4,625,766 - NIAGMN_23650 0.13 -1.5 4,625,917 - NIAGMN_23650 0.51 -1.1 4,626,033 - NIAGMN_23650 0.81 +1.0 4,626,089 - +2.9 4,626,311 - NIAGMN_23655 0.31 -1.6 4,626,377 + NIAGMN_23655 0.41 -0.4 4,626,378 - NIAGMN_23655 0.41 +1.4 4,626,521 + NIAGMN_23655 0.62 +0.2 4,626,728 + +1.0 4,626,809 - +0.8 4,626,809 - +2.0 4,626,839 + NIAGMN_23660 0.23 +2.0 4,627,027 + NIAGMN_23665 0.12 -0.6 4,627,028 - NIAGMN_23665 0.12 -0.6
Or see this region's nucleotide sequence