Strain Fitness in Escherichia coli ECRC102 around NIAGMN_23635

Experiment: L-Arabinose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntNIAGMN_23625 and NIAGMN_23630 are separated by 122 nucleotidesNIAGMN_23630 and ydeI are separated by 332 nucleotidesydeI and NIAGMN_23640 are separated by 119 nucleotidesNIAGMN_23640 and NIAGMN_23650 are separated by 233 nucleotidesNIAGMN_23650 and NIAGMN_23655 overlap by 1 nucleotides NIAGMN_23625: NIAGMN_23625 - Uncharacterized protein H0150, at 4,615,872 to 4,624,253 _23625 NIAGMN_23630: NIAGMN_23630 - hypothetical protein, at 4,624,376 to 4,624,471 _23630 NIAGMN_23635: ydeI - TIGR00156 family protein, at 4,624,804 to 4,625,148 ydeI NIAGMN_23640: NIAGMN_23640 - protein hokC, at 4,625,268 to 4,625,480 _23640 NIAGMN_23650: NIAGMN_23650 - tRNA-synt-1g domain-containing protein, at 4,625,714 to 4,626,109 _23650 NIAGMN_23655: NIAGMN_23655 - Uncharacterized protein H0156, at 4,626,109 to 4,626,768 _23655 Position (kb) 4624 4625 4626Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4623.813 kb on + strandat 4623.813 kb on + strandat 4623.887 kb on + strandat 4623.887 kb on + strandat 4623.889 kb on + strandat 4623.890 kb on - strandat 4623.963 kb on + strandat 4624.076 kb on + strandat 4624.131 kb on + strandat 4624.193 kb on + strandat 4624.227 kb on + strandat 4624.313 kb on + strandat 4624.314 kb on - strandat 4624.326 kb on + strandat 4624.327 kb on - strandat 4624.327 kb on - strandat 4624.327 kb on - strandat 4624.330 kb on - strandat 4624.334 kb on + strandat 4624.334 kb on + strandat 4624.334 kb on + strandat 4624.335 kb on - strandat 4624.335 kb on - strandat 4624.337 kb on - strandat 4624.360 kb on + strandat 4624.360 kb on + strandat 4624.381 kb on + strandat 4624.381 kb on + strandat 4624.412 kb on + strand, within NIAGMN_23630at 4624.412 kb on + strand, within NIAGMN_23630at 4624.413 kb on - strand, within NIAGMN_23630at 4624.438 kb on + strand, within NIAGMN_23630at 4624.438 kb on + strand, within NIAGMN_23630at 4624.439 kb on - strand, within NIAGMN_23630at 4624.479 kb on + strandat 4624.486 kb on + strandat 4624.506 kb on + strandat 4624.506 kb on + strandat 4624.595 kb on + strandat 4624.613 kb on + strandat 4624.655 kb on + strandat 4624.656 kb on - strandat 4624.656 kb on - strandat 4624.665 kb on + strandat 4624.667 kb on + strandat 4624.829 kb on - strandat 4624.916 kb on - strand, within ydeIat 4625.290 kb on - strand, within NIAGMN_23640at 4625.657 kb on - strandat 4625.680 kb on - strandat 4625.766 kb on - strand, within NIAGMN_23650at 4625.766 kb on - strand, within NIAGMN_23650at 4625.917 kb on - strand, within NIAGMN_23650at 4626.033 kb on - strand, within NIAGMN_23650at 4626.089 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
remove
4,623,813 + +1.6
4,623,813 + -2.5
4,623,887 + +1.5
4,623,887 + +0.6
4,623,889 + -1.0
4,623,890 - -2.2
4,623,963 + -3.1
4,624,076 + -2.2
4,624,131 + +0.1
4,624,193 + -0.5
4,624,227 + +2.8
4,624,313 + -0.5
4,624,314 - -0.4
4,624,326 + -2.6
4,624,327 - +0.1
4,624,327 - +0.6
4,624,327 - +0.0
4,624,330 - -2.7
4,624,334 + -0.2
4,624,334 + -2.0
4,624,334 + +1.3
4,624,335 - +1.8
4,624,335 - -2.4
4,624,337 - -0.2
4,624,360 + -2.6
4,624,360 + -1.5
4,624,381 + -3.6
4,624,381 + +1.4
4,624,412 + NIAGMN_23630 0.38 -1.4
4,624,412 + NIAGMN_23630 0.38 +1.4
4,624,413 - NIAGMN_23630 0.39 -1.7
4,624,438 + NIAGMN_23630 0.65 +0.6
4,624,438 + NIAGMN_23630 0.65 +2.6
4,624,439 - NIAGMN_23630 0.66 -1.1
4,624,479 + -0.8
4,624,486 + -1.0
4,624,506 + -0.5
4,624,506 + +0.0
4,624,595 + +0.9
4,624,613 + +0.2
4,624,655 + -2.3
4,624,656 - -0.1
4,624,656 - -0.3
4,624,665 + +0.7
4,624,667 + -0.3
4,624,829 - +2.5
4,624,916 - ydeI NIAGMN_23635 0.32 +1.1
4,625,290 - NIAGMN_23640 0.10 -3.6
4,625,657 - +1.7
4,625,680 - +2.4
4,625,766 - NIAGMN_23650 0.13 -3.4
4,625,766 - NIAGMN_23650 0.13 -1.5
4,625,917 - NIAGMN_23650 0.51 -1.1
4,626,033 - NIAGMN_23650 0.81 +1.0
4,626,089 - +2.9

Or see this region's nucleotide sequence