Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NIAGMN_23205 and NIAGMN_23210 are separated by 85 nucleotides NIAGMN_23210 and NIAGMN_23215 are separated by 71 nucleotides NIAGMN_23215 and NIAGMN_23220 overlap by 8 nucleotides NIAGMN_23220 and NIAGMN_23225 are separated by 3 nucleotides NIAGMN_23225 and NIAGMN_23230 are separated by 1 nucleotides NIAGMN_23230 and NIAGMN_23235 are separated by 1 nucleotides NIAGMN_23235 and NIAGMN_23240 are separated by 1 nucleotides
NIAGMN_23205: NIAGMN_23205 - DNA-binding protein, at 4,568,708 to 4,568,992
_23205
NIAGMN_23210: NIAGMN_23210 - Gene 19 protein, at 4,569,078 to 4,569,377
_23210
NIAGMN_23215: NIAGMN_23215 - RNA-binding protein, at 4,569,449 to 4,569,733
_23215
NIAGMN_23220: NIAGMN_23220 - DUF551 domain-containing protein, at 4,569,726 to 4,570,349
_23220
NIAGMN_23225: NIAGMN_23225 - hypothetical protein, at 4,570,353 to 4,570,640
_23225
NIAGMN_23230: NIAGMN_23230 - sugar acetyltransferase inhibitor, at 4,570,642 to 4,570,860
_23230
NIAGMN_23235: NIAGMN_23235 - hypothetical protein, at 4,570,862 to 4,571,077
_23235
NIAGMN_23240: NIAGMN_23240 - hypothetical protein, at 4,571,079 to 4,571,267
_23240
Position (kb) 4569
4570
4571 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 4568.727 kb on - strand at 4568.861 kb on + strand, within NIAGMN_23205 at 4568.934 kb on - strand, within NIAGMN_23205 at 4568.969 kb on - strand at 4569.012 kb on - strand at 4569.099 kb on + strand at 4569.100 kb on - strand at 4569.121 kb on - strand, within NIAGMN_23210 at 4569.144 kb on - strand, within NIAGMN_23210 at 4569.144 kb on - strand, within NIAGMN_23210 at 4569.188 kb on + strand, within NIAGMN_23210 at 4569.243 kb on - strand, within NIAGMN_23210 at 4569.933 kb on - strand, within NIAGMN_23220 at 4570.184 kb on - strand, within NIAGMN_23220 at 4570.445 kb on + strand, within NIAGMN_23225 at 4570.654 kb on - strand at 4570.710 kb on - strand, within NIAGMN_23230 at 4570.854 kb on + strand at 4570.855 kb on - strand at 4570.985 kb on - strand, within NIAGMN_23235 at 4570.987 kb on - strand, within NIAGMN_23235 at 4571.009 kb on - strand, within NIAGMN_23235 at 4571.011 kb on - strand, within NIAGMN_23235 at 4571.071 kb on + strand at 4571.078 kb on - strand at 4571.168 kb on - strand, within NIAGMN_23240
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 4,568,727 - -0.7 4,568,861 + NIAGMN_23205 0.54 -1.2 4,568,934 - NIAGMN_23205 0.79 -1.5 4,568,969 - +0.3 4,569,012 - +0.1 4,569,099 + -0.5 4,569,100 - +2.9 4,569,121 - NIAGMN_23210 0.14 +1.4 4,569,144 - NIAGMN_23210 0.22 +0.1 4,569,144 - NIAGMN_23210 0.22 +0.2 4,569,188 + NIAGMN_23210 0.37 -0.9 4,569,243 - NIAGMN_23210 0.55 +3.1 4,569,933 - NIAGMN_23220 0.33 -1.5 4,570,184 - NIAGMN_23220 0.73 -4.4 4,570,445 + NIAGMN_23225 0.32 +0.0 4,570,654 - -1.6 4,570,710 - NIAGMN_23230 0.31 -0.2 4,570,854 + -0.0 4,570,855 - +0.7 4,570,985 - NIAGMN_23235 0.57 +0.9 4,570,987 - NIAGMN_23235 0.58 -1.1 4,571,009 - NIAGMN_23235 0.68 +0.2 4,571,011 - NIAGMN_23235 0.69 -0.2 4,571,071 + +0.9 4,571,078 - +0.3 4,571,168 - NIAGMN_23240 0.47 -0.7
Or see this region's nucleotide sequence