Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fimB and NIAGMN_23205 are separated by 52 nucleotides NIAGMN_23205 and NIAGMN_23210 are separated by 85 nucleotides NIAGMN_23210 and NIAGMN_23215 are separated by 71 nucleotides NIAGMN_23215 and NIAGMN_23220 overlap by 8 nucleotides
NIAGMN_23200: fimB - site-specific integrase, at 4,567,345 to 4,568,655
fimB
NIAGMN_23205: NIAGMN_23205 - DNA-binding protein, at 4,568,708 to 4,568,992
_23205
NIAGMN_23210: NIAGMN_23210 - Gene 19 protein, at 4,569,078 to 4,569,377
_23210
NIAGMN_23215: NIAGMN_23215 - RNA-binding protein, at 4,569,449 to 4,569,733
_23215
NIAGMN_23220: NIAGMN_23220 - DUF551 domain-containing protein, at 4,569,726 to 4,570,349
_23220
Position (kb) 4568
4569 Strain fitness (log2 ratio) -1
0
1
2
3 at 4567.829 kb on - strand, within fimB at 4568.353 kb on - strand, within fimB at 4568.640 kb on - strand at 4568.710 kb on - strand at 4568.727 kb on - strand at 4568.861 kb on + strand, within NIAGMN_23205 at 4568.934 kb on - strand, within NIAGMN_23205 at 4568.969 kb on - strand at 4569.012 kb on - strand at 4569.099 kb on + strand at 4569.100 kb on - strand at 4569.121 kb on - strand, within NIAGMN_23210 at 4569.144 kb on - strand, within NIAGMN_23210 at 4569.144 kb on - strand, within NIAGMN_23210 at 4569.188 kb on + strand, within NIAGMN_23210 at 4569.243 kb on - strand, within NIAGMN_23210 at 4569.933 kb on - strand, within NIAGMN_23220
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 4,567,829 - fimB NIAGMN_23200 0.37 -1.2 4,568,353 - fimB NIAGMN_23200 0.77 -0.9 4,568,640 - +2.1 4,568,710 - +2.8 4,568,727 - -0.7 4,568,861 + NIAGMN_23205 0.54 -1.2 4,568,934 - NIAGMN_23205 0.79 -1.5 4,568,969 - +0.3 4,569,012 - +0.1 4,569,099 + -0.5 4,569,100 - +2.9 4,569,121 - NIAGMN_23210 0.14 +1.4 4,569,144 - NIAGMN_23210 0.22 +0.1 4,569,144 - NIAGMN_23210 0.22 +0.2 4,569,188 + NIAGMN_23210 0.37 -0.9 4,569,243 - NIAGMN_23210 0.55 +3.1 4,569,933 - NIAGMN_23220 0.33 -1.5
Or see this region's nucleotide sequence