Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NIAGMN_22895 and NIAGMN_22900 are separated by 155 nucleotides NIAGMN_22900 and NIAGMN_22905 are separated by 12 nucleotides NIAGMN_22905 and NIAGMN_22910 are separated by 7 nucleotides NIAGMN_22910 and NIAGMN_22915 are separated by 464 nucleotides
NIAGMN_22895: NIAGMN_22895 - SAR-endolysin, at 4,507,765 to 4,508,298
_22895
NIAGMN_22900: NIAGMN_22900 - hypothetical protein, at 4,508,454 to 4,508,636
_22900
NIAGMN_22905: NIAGMN_22905 - hypothetical protein, at 4,508,649 to 4,508,780
_22905
NIAGMN_22910: NIAGMN_22910 - lysis protein, at 4,508,788 to 4,509,255
_22910
NIAGMN_22915: NIAGMN_22915 - PerC family transcriptional regulator, at 4,509,720 to 4,510,034
_22915
Position (kb) 4508
4509
4510 Strain fitness (log2 ratio) -1
0
1 at 4508.134 kb on + strand, within NIAGMN_22895 at 4508.145 kb on + strand, within NIAGMN_22895 at 4508.726 kb on + strand, within NIAGMN_22905 at 4508.756 kb on - strand, within NIAGMN_22905 at 4508.947 kb on - strand, within NIAGMN_22910 at 4509.606 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 4,508,134 + NIAGMN_22895 0.69 +0.8 4,508,145 + NIAGMN_22895 0.71 +1.2 4,508,726 + NIAGMN_22905 0.58 -0.0 4,508,756 - NIAGMN_22905 0.81 -0.5 4,508,947 - NIAGMN_22910 0.34 -1.6 4,509,606 - -0.7
Or see this region's nucleotide sequence