Strain Fitness in Escherichia coli ECRC102 around NIAGMN_22405

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmanC2 and cpsG are separated by 3 nucleotides NIAGMN_22400: manC2 - mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase, at 4,422,090 to 4,423,538 manC2 NIAGMN_22405: cpsG - colanic acid biosynthesis phosphomannomutase CpsG, at 4,423,542 to 4,424,912 cpsG Position (kb) 4423 4424 4425Strain fitness (log2 ratio) -3 -2 -1 0 1at 4423.502 kb on + strandat 4423.502 kb on + strandat 4423.504 kb on + strandat 4423.504 kb on + strandat 4423.521 kb on + strandat 4424.321 kb on + strand, within cpsG

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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4,423,502 + +0.7
4,423,502 + +1.2
4,423,504 + -0.5
4,423,504 + -1.4
4,423,521 + -0.2
4,424,321 + cpsG NIAGMN_22405 0.57 -3.0

Or see this region's nucleotide sequence