Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yegD and alkA are separated by 181 nucleotides alkA and mASE1 are separated by 100 nucleotides
NIAGMN_22195: yegD - molecular chaperone, at 4,375,506 to 4,376,810
yegD
NIAGMN_22200: alkA - DNA-3-methyladenine glycosylase 2, at 4,376,992 to 4,377,840
alkA
NIAGMN_22205: mASE1 - diguanylate cyclase, at 4,377,941 to 4,380,748
mASE1
Position (kb) 4376
4377
4378 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 4376.245 kb on - strand, within yegD at 4376.245 kb on - strand, within yegD at 4376.257 kb on + strand, within yegD at 4376.412 kb on - strand, within yegD at 4376.573 kb on - strand, within yegD at 4376.573 kb on - strand, within yegD at 4376.573 kb on - strand, within yegD at 4376.640 kb on - strand, within yegD at 4376.641 kb on + strand, within yegD at 4376.839 kb on + strand at 4376.853 kb on - strand at 4376.863 kb on + strand at 4376.928 kb on + strand at 4376.961 kb on + strand at 4376.980 kb on + strand at 4376.995 kb on + strand at 4376.995 kb on + strand at 4376.995 kb on + strand at 4376.995 kb on + strand at 4376.997 kb on + strand at 4377.141 kb on + strand, within alkA at 4377.179 kb on + strand, within alkA at 4377.407 kb on + strand, within alkA at 4377.445 kb on + strand, within alkA at 4377.445 kb on + strand, within alkA at 4377.445 kb on + strand, within alkA at 4377.445 kb on + strand, within alkA at 4377.497 kb on + strand, within alkA at 4377.506 kb on + strand, within alkA at 4377.510 kb on + strand, within alkA at 4377.510 kb on + strand, within alkA at 4377.573 kb on - strand, within alkA at 4377.757 kb on + strand at 4377.801 kb on + strand at 4377.808 kb on + strand at 4377.810 kb on + strand at 4377.810 kb on + strand at 4377.810 kb on + strand at 4377.947 kb on - strand at 4377.958 kb on - strand at 4377.965 kb on - strand at 4378.144 kb on + strand at 4378.145 kb on - strand at 4378.145 kb on - strand at 4378.186 kb on - strand at 4378.195 kb on + strand at 4378.319 kb on - strand, within mASE1 at 4378.328 kb on + strand, within mASE1 at 4378.329 kb on - strand, within mASE1 at 4378.550 kb on - strand, within mASE1
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 4,376,245 - yegD NIAGMN_22195 0.57 +2.9 4,376,245 - yegD NIAGMN_22195 0.57 +0.5 4,376,257 + yegD NIAGMN_22195 0.58 -1.7 4,376,412 - yegD NIAGMN_22195 0.69 -0.6 4,376,573 - yegD NIAGMN_22195 0.82 -2.5 4,376,573 - yegD NIAGMN_22195 0.82 -2.0 4,376,573 - yegD NIAGMN_22195 0.82 -0.3 4,376,640 - yegD NIAGMN_22195 0.87 +0.4 4,376,641 + yegD NIAGMN_22195 0.87 -0.2 4,376,839 + +2.6 4,376,853 - -2.5 4,376,863 + -1.2 4,376,928 + +0.5 4,376,961 + +0.2 4,376,980 + -2.2 4,376,995 + -2.6 4,376,995 + +0.8 4,376,995 + +2.2 4,376,995 + -2.3 4,376,997 + +0.4 4,377,141 + alkA NIAGMN_22200 0.18 +0.3 4,377,179 + alkA NIAGMN_22200 0.22 +3.1 4,377,407 + alkA NIAGMN_22200 0.49 +0.5 4,377,445 + alkA NIAGMN_22200 0.53 -2.9 4,377,445 + alkA NIAGMN_22200 0.53 +0.3 4,377,445 + alkA NIAGMN_22200 0.53 -1.3 4,377,445 + alkA NIAGMN_22200 0.53 -0.2 4,377,497 + alkA NIAGMN_22200 0.59 +0.1 4,377,506 + alkA NIAGMN_22200 0.61 -1.0 4,377,510 + alkA NIAGMN_22200 0.61 -0.6 4,377,510 + alkA NIAGMN_22200 0.61 +4.9 4,377,573 - alkA NIAGMN_22200 0.68 -0.8 4,377,757 + -0.2 4,377,801 + -1.7 4,377,808 + -1.1 4,377,810 + +0.7 4,377,810 + -0.5 4,377,810 + -1.3 4,377,947 - -0.7 4,377,958 - +0.1 4,377,965 - -0.8 4,378,144 + +0.0 4,378,145 - -2.5 4,378,145 - -1.3 4,378,186 - -1.3 4,378,195 + -1.5 4,378,319 - mASE1 NIAGMN_22205 0.13 -1.1 4,378,328 + mASE1 NIAGMN_22205 0.14 +0.3 4,378,329 - mASE1 NIAGMN_22205 0.14 -2.1 4,378,550 - mASE1 NIAGMN_22205 0.22 -0.9
Or see this region's nucleotide sequence