Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yfcA and epmC overlap by 1 nucleotides epmC and yfcL are separated by 33 nucleotides yfcL and mnmC are separated by 120 nucleotides mnmC and fabB are separated by 158 nucleotides
NIAGMN_20400: yfcA - putative membrane transporter protein YfcA, at 4,029,749 to 4,030,558
yfcA
NIAGMN_20405: epmC - elongation factor P hydroxylase, at 4,030,558 to 4,031,106
epmC
NIAGMN_20410: yfcL - Uncharacterized protein YfcL, at 4,031,140 to 4,031,418
yfcL
NIAGMN_20415: mnmC - bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC, at 4,031,539 to 4,033,545
mnmC
NIAGMN_20420: fabB - beta-ketoacyl-ACP synthase I, at 4,033,704 to 4,034,924
fabB
Position (kb) 4031
4032
4033
4034 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 4030.556 kb on + strand at 4030.567 kb on - strand at 4030.602 kb on + strand at 4030.660 kb on + strand, within epmC at 4030.660 kb on + strand, within epmC at 4030.660 kb on + strand, within epmC at 4030.660 kb on + strand, within epmC at 4030.661 kb on - strand, within epmC at 4030.661 kb on - strand, within epmC at 4030.661 kb on - strand, within epmC at 4030.682 kb on + strand, within epmC at 4030.682 kb on + strand, within epmC at 4030.683 kb on - strand, within epmC at 4030.687 kb on + strand, within epmC at 4030.717 kb on + strand, within epmC at 4030.752 kb on + strand, within epmC at 4030.905 kb on + strand, within epmC at 4030.906 kb on - strand, within epmC at 4030.970 kb on + strand, within epmC at 4030.971 kb on - strand, within epmC at 4030.990 kb on + strand, within epmC at 4030.995 kb on - strand, within epmC at 4031.050 kb on + strand, within epmC at 4031.123 kb on + strand at 4031.123 kb on + strand at 4031.124 kb on - strand at 4031.244 kb on + strand, within yfcL at 4031.244 kb on + strand, within yfcL at 4031.244 kb on + strand, within yfcL at 4031.244 kb on + strand, within yfcL at 4031.245 kb on - strand, within yfcL at 4031.245 kb on - strand, within yfcL at 4031.245 kb on - strand, within yfcL at 4031.245 kb on - strand, within yfcL at 4031.249 kb on + strand, within yfcL at 4031.301 kb on + strand, within yfcL at 4031.301 kb on + strand, within yfcL at 4031.301 kb on + strand, within yfcL at 4031.302 kb on - strand, within yfcL at 4031.302 kb on - strand, within yfcL at 4031.302 kb on - strand, within yfcL at 4031.380 kb on - strand, within yfcL at 4031.466 kb on + strand at 4031.466 kb on + strand at 4031.489 kb on - strand at 4031.600 kb on - strand at 4031.702 kb on - strand at 4031.702 kb on - strand at 4031.778 kb on - strand, within mnmC at 4031.811 kb on + strand, within mnmC at 4031.812 kb on - strand, within mnmC at 4031.812 kb on - strand, within mnmC at 4031.812 kb on - strand, within mnmC at 4031.998 kb on - strand, within mnmC at 4031.998 kb on - strand, within mnmC at 4032.090 kb on + strand, within mnmC at 4032.173 kb on - strand, within mnmC at 4032.179 kb on - strand, within mnmC at 4032.242 kb on - strand, within mnmC at 4032.264 kb on - strand, within mnmC at 4032.267 kb on - strand, within mnmC at 4032.306 kb on + strand, within mnmC at 4032.351 kb on + strand, within mnmC at 4032.352 kb on - strand, within mnmC at 4032.352 kb on - strand, within mnmC at 4032.382 kb on - strand, within mnmC at 4032.412 kb on + strand, within mnmC at 4032.460 kb on - strand, within mnmC at 4032.484 kb on + strand, within mnmC at 4032.485 kb on - strand, within mnmC at 4032.485 kb on - strand, within mnmC at 4032.537 kb on - strand, within mnmC at 4032.556 kb on - strand, within mnmC at 4032.565 kb on - strand, within mnmC at 4032.580 kb on + strand, within mnmC at 4032.580 kb on + strand, within mnmC at 4032.775 kb on - strand, within mnmC at 4032.803 kb on - strand, within mnmC at 4032.803 kb on - strand, within mnmC at 4032.915 kb on + strand, within mnmC at 4032.916 kb on - strand, within mnmC at 4032.916 kb on - strand, within mnmC at 4032.916 kb on - strand, within mnmC at 4033.030 kb on + strand, within mnmC at 4033.031 kb on - strand, within mnmC at 4033.075 kb on - strand, within mnmC at 4033.121 kb on - strand, within mnmC at 4033.124 kb on - strand, within mnmC at 4033.124 kb on - strand, within mnmC at 4033.270 kb on + strand, within mnmC at 4033.333 kb on + strand, within mnmC at 4033.361 kb on - strand at 4033.428 kb on - strand at 4033.494 kb on + strand at 4033.506 kb on + strand at 4033.507 kb on - strand at 4033.528 kb on + strand at 4033.528 kb on + strand at 4033.547 kb on + strand at 4033.552 kb on + strand at 4033.571 kb on - strand at 4033.616 kb on + strand at 4033.674 kb on + strand at 4033.674 kb on + strand at 4033.674 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 4,030,556 + +0.4 4,030,567 - +2.0 4,030,602 + -0.2 4,030,660 + epmC NIAGMN_20405 0.19 +0.3 4,030,660 + epmC NIAGMN_20405 0.19 -0.5 4,030,660 + epmC NIAGMN_20405 0.19 -0.7 4,030,660 + epmC NIAGMN_20405 0.19 +0.2 4,030,661 - epmC NIAGMN_20405 0.19 +2.0 4,030,661 - epmC NIAGMN_20405 0.19 +2.4 4,030,661 - epmC NIAGMN_20405 0.19 -1.6 4,030,682 + epmC NIAGMN_20405 0.23 +0.8 4,030,682 + epmC NIAGMN_20405 0.23 -2.0 4,030,683 - epmC NIAGMN_20405 0.23 +0.9 4,030,687 + epmC NIAGMN_20405 0.23 -2.1 4,030,717 + epmC NIAGMN_20405 0.29 +0.5 4,030,752 + epmC NIAGMN_20405 0.35 +3.2 4,030,905 + epmC NIAGMN_20405 0.63 -0.3 4,030,906 - epmC NIAGMN_20405 0.63 -1.6 4,030,970 + epmC NIAGMN_20405 0.75 +0.5 4,030,971 - epmC NIAGMN_20405 0.75 -0.2 4,030,990 + epmC NIAGMN_20405 0.79 -1.7 4,030,995 - epmC NIAGMN_20405 0.80 -1.6 4,031,050 + epmC NIAGMN_20405 0.90 -3.6 4,031,123 + -0.2 4,031,123 + +0.6 4,031,124 - +0.9 4,031,244 + yfcL NIAGMN_20410 0.37 -0.8 4,031,244 + yfcL NIAGMN_20410 0.37 -2.0 4,031,244 + yfcL NIAGMN_20410 0.37 +3.3 4,031,244 + yfcL NIAGMN_20410 0.37 -2.6 4,031,245 - yfcL NIAGMN_20410 0.38 -1.1 4,031,245 - yfcL NIAGMN_20410 0.38 -0.7 4,031,245 - yfcL NIAGMN_20410 0.38 +0.2 4,031,245 - yfcL NIAGMN_20410 0.38 +1.9 4,031,249 + yfcL NIAGMN_20410 0.39 -1.2 4,031,301 + yfcL NIAGMN_20410 0.58 -0.2 4,031,301 + yfcL NIAGMN_20410 0.58 +3.6 4,031,301 + yfcL NIAGMN_20410 0.58 -0.2 4,031,302 - yfcL NIAGMN_20410 0.58 +0.5 4,031,302 - yfcL NIAGMN_20410 0.58 -0.4 4,031,302 - yfcL NIAGMN_20410 0.58 -0.4 4,031,380 - yfcL NIAGMN_20410 0.86 -1.0 4,031,466 + -2.5 4,031,466 + +0.2 4,031,489 - -0.5 4,031,600 - -0.8 4,031,702 - +0.5 4,031,702 - -0.3 4,031,778 - mnmC NIAGMN_20415 0.12 -0.2 4,031,811 + mnmC NIAGMN_20415 0.14 -0.9 4,031,812 - mnmC NIAGMN_20415 0.14 -0.6 4,031,812 - mnmC NIAGMN_20415 0.14 +0.1 4,031,812 - mnmC NIAGMN_20415 0.14 -0.1 4,031,998 - mnmC NIAGMN_20415 0.23 -0.6 4,031,998 - mnmC NIAGMN_20415 0.23 +0.9 4,032,090 + mnmC NIAGMN_20415 0.27 +0.2 4,032,173 - mnmC NIAGMN_20415 0.32 +0.9 4,032,179 - mnmC NIAGMN_20415 0.32 +0.7 4,032,242 - mnmC NIAGMN_20415 0.35 +2.2 4,032,264 - mnmC NIAGMN_20415 0.36 +0.3 4,032,267 - mnmC NIAGMN_20415 0.36 -0.2 4,032,306 + mnmC NIAGMN_20415 0.38 +1.5 4,032,351 + mnmC NIAGMN_20415 0.40 -0.4 4,032,352 - mnmC NIAGMN_20415 0.41 -3.6 4,032,352 - mnmC NIAGMN_20415 0.41 +0.0 4,032,382 - mnmC NIAGMN_20415 0.42 -1.0 4,032,412 + mnmC NIAGMN_20415 0.43 -2.6 4,032,460 - mnmC NIAGMN_20415 0.46 +0.5 4,032,484 + mnmC NIAGMN_20415 0.47 -0.9 4,032,485 - mnmC NIAGMN_20415 0.47 -1.7 4,032,485 - mnmC NIAGMN_20415 0.47 +2.6 4,032,537 - mnmC NIAGMN_20415 0.50 -1.0 4,032,556 - mnmC NIAGMN_20415 0.51 +2.8 4,032,565 - mnmC NIAGMN_20415 0.51 +0.2 4,032,580 + mnmC NIAGMN_20415 0.52 +0.2 4,032,580 + mnmC NIAGMN_20415 0.52 +0.8 4,032,775 - mnmC NIAGMN_20415 0.62 +0.4 4,032,803 - mnmC NIAGMN_20415 0.63 -0.8 4,032,803 - mnmC NIAGMN_20415 0.63 -2.9 4,032,915 + mnmC NIAGMN_20415 0.69 +0.9 4,032,916 - mnmC NIAGMN_20415 0.69 -0.9 4,032,916 - mnmC NIAGMN_20415 0.69 -0.1 4,032,916 - mnmC NIAGMN_20415 0.69 -4.5 4,033,030 + mnmC NIAGMN_20415 0.74 +1.7 4,033,031 - mnmC NIAGMN_20415 0.74 +0.4 4,033,075 - mnmC NIAGMN_20415 0.77 +0.4 4,033,121 - mnmC NIAGMN_20415 0.79 +0.9 4,033,124 - mnmC NIAGMN_20415 0.79 -1.5 4,033,124 - mnmC NIAGMN_20415 0.79 +0.9 4,033,270 + mnmC NIAGMN_20415 0.86 +1.0 4,033,333 + mnmC NIAGMN_20415 0.89 +0.1 4,033,361 - -0.6 4,033,428 - -1.6 4,033,494 + -0.0 4,033,506 + +0.1 4,033,507 - -0.6 4,033,528 + -0.7 4,033,528 + -0.4 4,033,547 + -1.7 4,033,552 + -1.8 4,033,571 - +1.1 4,033,616 + -2.4 4,033,674 + -0.6 4,033,674 + +1.4 4,033,674 + +1.8
Or see this region's nucleotide sequence