Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt perM and focB are separated by 37 nucleotides focB and hyfR are separated by 21 nucleotides
NIAGMN_19610: perM - Putative permease PerM, at 3,869,647 to 3,870,708
perM
NIAGMN_19615: focB - formate transporter FocB, at 3,870,746 to 3,871,594
focB
NIAGMN_19620: hyfR - DNA-binding transcriptional regulator HyfR, at 3,871,616 to 3,873,628
hyfR
Position (kb)
3870
3871
3872 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 3869.751 kb on + strand at 3869.781 kb on + strand, within perM at 3869.781 kb on + strand, within perM at 3869.829 kb on + strand, within perM at 3869.829 kb on + strand, within perM at 3869.864 kb on + strand, within perM at 3869.864 kb on + strand, within perM at 3869.865 kb on - strand, within perM at 3869.865 kb on - strand, within perM at 3869.884 kb on - strand, within perM at 3869.938 kb on + strand, within perM at 3869.942 kb on + strand, within perM at 3869.981 kb on - strand, within perM at 3870.152 kb on + strand, within perM at 3870.280 kb on + strand, within perM at 3870.280 kb on + strand, within perM at 3870.280 kb on + strand, within perM at 3870.280 kb on + strand, within perM at 3870.280 kb on + strand, within perM at 3870.280 kb on + strand, within perM at 3870.280 kb on + strand, within perM at 3870.280 kb on + strand, within perM at 3870.280 kb on + strand, within perM at 3870.281 kb on - strand, within perM at 3870.281 kb on - strand, within perM at 3870.311 kb on + strand, within perM at 3870.311 kb on + strand, within perM at 3870.358 kb on + strand, within perM at 3870.359 kb on - strand, within perM at 3870.359 kb on - strand, within perM at 3870.359 kb on - strand, within perM at 3870.399 kb on + strand, within perM at 3870.399 kb on + strand, within perM at 3870.399 kb on + strand, within perM at 3870.399 kb on + strand, within perM at 3870.399 kb on + strand, within perM at 3870.499 kb on + strand, within perM at 3870.499 kb on + strand, within perM at 3870.499 kb on + strand, within perM at 3870.533 kb on + strand, within perM at 3870.536 kb on + strand, within perM at 3870.629 kb on + strand at 3870.696 kb on - strand at 3870.766 kb on - strand at 3870.766 kb on - strand at 3870.766 kb on - strand at 3870.785 kb on - strand at 3870.785 kb on - strand at 3870.811 kb on + strand at 3870.811 kb on + strand at 3870.812 kb on - strand at 3870.812 kb on - strand at 3870.812 kb on - strand at 3870.847 kb on + strand, within focB at 3870.848 kb on - strand, within focB at 3870.913 kb on + strand, within focB at 3871.121 kb on - strand, within focB at 3871.121 kb on - strand, within focB at 3871.148 kb on + strand, within focB at 3871.206 kb on - strand, within focB at 3871.282 kb on + strand, within focB at 3871.283 kb on - strand, within focB at 3871.283 kb on - strand, within focB at 3871.283 kb on - strand, within focB at 3871.283 kb on - strand, within focB at 3871.285 kb on + strand, within focB at 3871.463 kb on - strand, within focB at 3871.487 kb on + strand, within focB at 3871.599 kb on - strand at 3871.599 kb on - strand at 3871.599 kb on - strand at 3871.618 kb on - strand at 3871.618 kb on - strand at 3871.740 kb on - strand at 3871.740 kb on - strand at 3871.836 kb on - strand, within hyfR at 3871.868 kb on - strand, within hyfR at 3872.113 kb on - strand, within hyfR at 3872.206 kb on + strand, within hyfR at 3872.344 kb on + strand, within hyfR at 3872.345 kb on - strand, within hyfR at 3872.455 kb on + strand, within hyfR at 3872.456 kb on - strand, within hyfR at 3872.521 kb on + strand, within hyfR at 3872.543 kb on - strand, within hyfR at 3872.543 kb on - strand, within hyfR at 3872.543 kb on - strand, within hyfR at 3872.587 kb on + strand, within hyfR at 3872.588 kb on - strand, within hyfR at 3872.588 kb on - strand, within hyfR
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 3,869,751 + +1.1 3,869,781 + perM NIAGMN_19610 0.13 +2.4 3,869,781 + perM NIAGMN_19610 0.13 -0.2 3,869,829 + perM NIAGMN_19610 0.17 +0.3 3,869,829 + perM NIAGMN_19610 0.17 +1.3 3,869,864 + perM NIAGMN_19610 0.20 -1.6 3,869,864 + perM NIAGMN_19610 0.20 +0.7 3,869,865 - perM NIAGMN_19610 0.21 +0.2 3,869,865 - perM NIAGMN_19610 0.21 -2.8 3,869,884 - perM NIAGMN_19610 0.22 +2.2 3,869,938 + perM NIAGMN_19610 0.27 +1.3 3,869,942 + perM NIAGMN_19610 0.28 -0.4 3,869,981 - perM NIAGMN_19610 0.31 +0.2 3,870,152 + perM NIAGMN_19610 0.48 +4.3 3,870,280 + perM NIAGMN_19610 0.60 -0.3 3,870,280 + perM NIAGMN_19610 0.60 -0.8 3,870,280 + perM NIAGMN_19610 0.60 +2.0 3,870,280 + perM NIAGMN_19610 0.60 +0.3 3,870,280 + perM NIAGMN_19610 0.60 +0.4 3,870,280 + perM NIAGMN_19610 0.60 +0.7 3,870,280 + perM NIAGMN_19610 0.60 -1.4 3,870,280 + perM NIAGMN_19610 0.60 +0.2 3,870,280 + perM NIAGMN_19610 0.60 -0.2 3,870,281 - perM NIAGMN_19610 0.60 +2.4 3,870,281 - perM NIAGMN_19610 0.60 +2.1 3,870,311 + perM NIAGMN_19610 0.63 +0.2 3,870,311 + perM NIAGMN_19610 0.63 -3.1 3,870,358 + perM NIAGMN_19610 0.67 +0.2 3,870,359 - perM NIAGMN_19610 0.67 +0.3 3,870,359 - perM NIAGMN_19610 0.67 +0.8 3,870,359 - perM NIAGMN_19610 0.67 +0.3 3,870,399 + perM NIAGMN_19610 0.71 +0.4 3,870,399 + perM NIAGMN_19610 0.71 -0.4 3,870,399 + perM NIAGMN_19610 0.71 -1.8 3,870,399 + perM NIAGMN_19610 0.71 -1.5 3,870,399 + perM NIAGMN_19610 0.71 +0.5 3,870,499 + perM NIAGMN_19610 0.80 -3.0 3,870,499 + perM NIAGMN_19610 0.80 +2.7 3,870,499 + perM NIAGMN_19610 0.80 +0.7 3,870,533 + perM NIAGMN_19610 0.83 +0.3 3,870,536 + perM NIAGMN_19610 0.84 -1.2 3,870,629 + +0.3 3,870,696 - +0.1 3,870,766 - -0.2 3,870,766 - +0.6 3,870,766 - -2.0 3,870,785 - -2.1 3,870,785 - -1.6 3,870,811 + -0.2 3,870,811 + -0.1 3,870,812 - -2.6 3,870,812 - +1.1 3,870,812 - -1.5 3,870,847 + focB NIAGMN_19615 0.12 +0.6 3,870,848 - focB NIAGMN_19615 0.12 -1.1 3,870,913 + focB NIAGMN_19615 0.20 -0.7 3,871,121 - focB NIAGMN_19615 0.44 +3.1 3,871,121 - focB NIAGMN_19615 0.44 +0.1 3,871,148 + focB NIAGMN_19615 0.47 -0.4 3,871,206 - focB NIAGMN_19615 0.54 +0.5 3,871,282 + focB NIAGMN_19615 0.63 -3.0 3,871,283 - focB NIAGMN_19615 0.63 -2.6 3,871,283 - focB NIAGMN_19615 0.63 -0.2 3,871,283 - focB NIAGMN_19615 0.63 -2.3 3,871,283 - focB NIAGMN_19615 0.63 -0.2 3,871,285 + focB NIAGMN_19615 0.63 +0.1 3,871,463 - focB NIAGMN_19615 0.84 +0.8 3,871,487 + focB NIAGMN_19615 0.87 +1.2 3,871,599 - -1.5 3,871,599 - -0.0 3,871,599 - -1.2 3,871,618 - -0.3 3,871,618 - +0.3 3,871,740 - -0.2 3,871,740 - -0.8 3,871,836 - hyfR NIAGMN_19620 0.11 +1.5 3,871,868 - hyfR NIAGMN_19620 0.13 +0.1 3,872,113 - hyfR NIAGMN_19620 0.25 +0.3 3,872,206 + hyfR NIAGMN_19620 0.29 -0.9 3,872,344 + hyfR NIAGMN_19620 0.36 -1.1 3,872,345 - hyfR NIAGMN_19620 0.36 +0.6 3,872,455 + hyfR NIAGMN_19620 0.42 -2.0 3,872,456 - hyfR NIAGMN_19620 0.42 +1.8 3,872,521 + hyfR NIAGMN_19620 0.45 -0.5 3,872,543 - hyfR NIAGMN_19620 0.46 +1.3 3,872,543 - hyfR NIAGMN_19620 0.46 +1.1 3,872,543 - hyfR NIAGMN_19620 0.46 -1.4 3,872,587 + hyfR NIAGMN_19620 0.48 -0.0 3,872,588 - hyfR NIAGMN_19620 0.48 +1.2 3,872,588 - hyfR NIAGMN_19620 0.48 +1.0
Or see this region's nucleotide sequence