Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ser_trna and Arg_trna are separated by 3 nucleotides Arg_trna and Arg_trna are separated by 64 nucleotides Arg_trna and Arg_trna are separated by 62 nucleotides Arg_trna and Arg_trna are separated by 102 nucleotides Arg_trna and yqaB are separated by 280 nucleotides yqaB and yqaA overlap by 4 nucleotides yqaA and gshA are separated by 72 nucleotides
NIAGMN_18495: Ser_trna - tRNA-Ser(gct), at 3,659,100 to 3,659,192
_trna
NIAGMN_18500: Arg_trna - tRNA-Arg(acg), at 3,659,196 to 3,659,272
_trna
NIAGMN_18505: Arg_trna - tRNA-Arg(acg), at 3,659,337 to 3,659,413
_trna
NIAGMN_18510: Arg_trna - tRNA-Arg(acg), at 3,659,476 to 3,659,552
_trna
NIAGMN_18515: Arg_trna - tRNA-Arg(acg), at 3,659,655 to 3,659,731
_trna
NIAGMN_18520: yqaB - fructose-1-phosphate/6-phosphogluconate phosphatase, at 3,660,012 to 3,660,578
yqaB
NIAGMN_18525: yqaA - Inner membrane protein YqaA, at 3,660,575 to 3,661,003
yqaA
NIAGMN_18530: gshA - glutamate--cysteine ligase, at 3,661,076 to 3,662,632
gshA
Position (kb)
3660
3661 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3659.278 kb on + strand at 3659.285 kb on + strand at 3659.419 kb on + strand at 3659.419 kb on + strand at 3659.426 kb on + strand at 3659.434 kb on + strand at 3659.434 kb on + strand at 3659.553 kb on + strand at 3659.553 kb on + strand at 3659.562 kb on + strand at 3659.582 kb on + strand at 3659.612 kb on + strand at 3659.636 kb on + strand at 3659.732 kb on + strand at 3659.813 kb on + strand at 3659.970 kb on + strand at 3660.024 kb on + strand at 3660.024 kb on + strand at 3660.065 kb on + strand at 3660.111 kb on + strand, within yqaB at 3660.124 kb on - strand, within yqaB at 3660.185 kb on + strand, within yqaB at 3660.254 kb on + strand, within yqaB at 3660.254 kb on + strand, within yqaB at 3660.266 kb on + strand, within yqaB at 3660.385 kb on + strand, within yqaB at 3660.386 kb on - strand, within yqaB at 3660.435 kb on - strand, within yqaB at 3660.473 kb on + strand, within yqaB at 3660.633 kb on + strand, within yqaA at 3660.633 kb on + strand, within yqaA at 3660.634 kb on - strand, within yqaA at 3660.724 kb on + strand, within yqaA at 3660.727 kb on + strand, within yqaA at 3660.728 kb on - strand, within yqaA at 3660.741 kb on + strand, within yqaA at 3660.741 kb on + strand, within yqaA at 3660.745 kb on + strand, within yqaA at 3660.746 kb on - strand, within yqaA at 3660.778 kb on + strand, within yqaA at 3660.824 kb on + strand, within yqaA at 3660.825 kb on - strand, within yqaA at 3660.841 kb on - strand, within yqaA at 3660.843 kb on + strand, within yqaA at 3660.844 kb on - strand, within yqaA at 3660.844 kb on - strand, within yqaA at 3660.846 kb on + strand, within yqaA at 3660.846 kb on + strand, within yqaA at 3660.847 kb on - strand, within yqaA at 3660.873 kb on + strand, within yqaA at 3660.873 kb on + strand, within yqaA at 3660.873 kb on + strand, within yqaA at 3660.940 kb on + strand, within yqaA at 3660.953 kb on + strand, within yqaA at 3661.001 kb on + strand at 3661.002 kb on - strand at 3661.019 kb on + strand at 3661.019 kb on + strand at 3661.019 kb on + strand at 3661.020 kb on - strand at 3661.032 kb on - strand at 3661.032 kb on - strand at 3661.037 kb on + strand at 3661.037 kb on + strand at 3661.037 kb on + strand at 3661.037 kb on + strand at 3661.038 kb on - strand at 3661.038 kb on - strand at 3661.042 kb on + strand at 3661.090 kb on - strand at 3661.140 kb on + strand at 3661.218 kb on + strand at 3661.218 kb on + strand at 3661.218 kb on + strand at 3661.237 kb on + strand, within gshA at 3661.238 kb on - strand, within gshA at 3661.247 kb on - strand, within gshA at 3661.309 kb on + strand, within gshA at 3661.309 kb on + strand, within gshA at 3661.309 kb on + strand, within gshA at 3661.309 kb on + strand, within gshA at 3661.309 kb on + strand, within gshA at 3661.309 kb on + strand, within gshA at 3661.321 kb on + strand, within gshA at 3661.322 kb on - strand, within gshA at 3661.342 kb on + strand, within gshA at 3661.384 kb on + strand, within gshA at 3661.385 kb on - strand, within gshA at 3661.385 kb on - strand, within gshA at 3661.395 kb on - strand, within gshA at 3661.430 kb on + strand, within gshA at 3661.526 kb on + strand, within gshA
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 3,659,278 + +2.2 3,659,285 + -0.0 3,659,419 + +2.5 3,659,419 + -0.4 3,659,426 + -1.4 3,659,434 + -0.8 3,659,434 + +0.3 3,659,553 + -0.1 3,659,553 + +1.0 3,659,562 + +0.9 3,659,582 + -0.0 3,659,612 + -0.6 3,659,636 + +0.0 3,659,732 + +0.3 3,659,813 + +0.3 3,659,970 + -0.3 3,660,024 + +0.2 3,660,024 + -2.0 3,660,065 + +1.1 3,660,111 + yqaB NIAGMN_18520 0.17 +0.8 3,660,124 - yqaB NIAGMN_18520 0.20 +0.5 3,660,185 + yqaB NIAGMN_18520 0.31 -1.8 3,660,254 + yqaB NIAGMN_18520 0.43 -1.2 3,660,254 + yqaB NIAGMN_18520 0.43 -0.3 3,660,266 + yqaB NIAGMN_18520 0.45 -0.2 3,660,385 + yqaB NIAGMN_18520 0.66 +0.3 3,660,386 - yqaB NIAGMN_18520 0.66 +0.7 3,660,435 - yqaB NIAGMN_18520 0.75 +1.3 3,660,473 + yqaB NIAGMN_18520 0.81 +0.6 3,660,633 + yqaA NIAGMN_18525 0.14 +2.2 3,660,633 + yqaA NIAGMN_18525 0.14 -2.3 3,660,634 - yqaA NIAGMN_18525 0.14 +0.2 3,660,724 + yqaA NIAGMN_18525 0.35 +0.7 3,660,727 + yqaA NIAGMN_18525 0.35 -1.5 3,660,728 - yqaA NIAGMN_18525 0.36 -0.4 3,660,741 + yqaA NIAGMN_18525 0.39 -1.7 3,660,741 + yqaA NIAGMN_18525 0.39 +0.9 3,660,745 + yqaA NIAGMN_18525 0.40 +1.1 3,660,746 - yqaA NIAGMN_18525 0.40 +1.8 3,660,778 + yqaA NIAGMN_18525 0.47 +0.6 3,660,824 + yqaA NIAGMN_18525 0.58 +0.5 3,660,825 - yqaA NIAGMN_18525 0.58 +0.3 3,660,841 - yqaA NIAGMN_18525 0.62 +3.5 3,660,843 + yqaA NIAGMN_18525 0.62 -3.0 3,660,844 - yqaA NIAGMN_18525 0.63 -0.2 3,660,844 - yqaA NIAGMN_18525 0.63 -0.2 3,660,846 + yqaA NIAGMN_18525 0.63 -0.8 3,660,846 + yqaA NIAGMN_18525 0.63 -1.0 3,660,847 - yqaA NIAGMN_18525 0.63 +0.7 3,660,873 + yqaA NIAGMN_18525 0.69 -0.1 3,660,873 + yqaA NIAGMN_18525 0.69 -0.6 3,660,873 + yqaA NIAGMN_18525 0.69 +3.0 3,660,940 + yqaA NIAGMN_18525 0.85 -0.2 3,660,953 + yqaA NIAGMN_18525 0.88 -1.3 3,661,001 + +0.2 3,661,002 - -0.3 3,661,019 + +3.1 3,661,019 + -0.4 3,661,019 + -3.0 3,661,020 - -2.1 3,661,032 - +0.8 3,661,032 - -2.6 3,661,037 + -0.5 3,661,037 + -2.4 3,661,037 + +0.1 3,661,037 + -0.5 3,661,038 - +2.4 3,661,038 - -1.6 3,661,042 + -2.5 3,661,090 - -1.9 3,661,140 + -2.1 3,661,218 + -0.7 3,661,218 + +1.0 3,661,218 + +0.2 3,661,237 + gshA NIAGMN_18530 0.10 -1.3 3,661,238 - gshA NIAGMN_18530 0.10 +3.6 3,661,247 - gshA NIAGMN_18530 0.11 +0.3 3,661,309 + gshA NIAGMN_18530 0.15 -0.2 3,661,309 + gshA NIAGMN_18530 0.15 -0.7 3,661,309 + gshA NIAGMN_18530 0.15 +1.7 3,661,309 + gshA NIAGMN_18530 0.15 -0.8 3,661,309 + gshA NIAGMN_18530 0.15 -1.0 3,661,309 + gshA NIAGMN_18530 0.15 -3.2 3,661,321 + gshA NIAGMN_18530 0.16 +1.6 3,661,322 - gshA NIAGMN_18530 0.16 -0.2 3,661,342 + gshA NIAGMN_18530 0.17 +0.9 3,661,384 + gshA NIAGMN_18530 0.20 +1.5 3,661,385 - gshA NIAGMN_18530 0.20 -1.3 3,661,385 - gshA NIAGMN_18530 0.20 +0.7 3,661,395 - gshA NIAGMN_18530 0.20 -1.4 3,661,430 + gshA NIAGMN_18530 0.23 -1.6 3,661,526 + gshA NIAGMN_18530 0.29 -1.9
Or see this region's nucleotide sequence