Strain Fitness in Escherichia coli ECRC102 around NIAGMN_16670

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntparC_S129P and plsC are separated by 233 nucleotidesplsC and ftsP are separated by 74 nucleotides NIAGMN_16665: parC_S129P - DNA topoisomerase IV subunit A ParC, at 3,295,406 to 3,297,664 _S129P NIAGMN_16670: plsC - 1-acylglycerol-3-phosphate O-acyltransferase, at 3,297,898 to 3,298,635 plsC NIAGMN_16675: ftsP - cell division protein FtsP, at 3,298,710 to 3,300,122 ftsP Position (kb) 3297 3298 3299Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 3297.604 kb on + strandat 3297.605 kb on - strandat 3297.654 kb on - strandat 3297.662 kb on + strandat 3297.662 kb on + strandat 3297.662 kb on + strandat 3297.662 kb on + strandat 3297.662 kb on + strandat 3297.662 kb on + strandat 3297.662 kb on + strandat 3297.663 kb on - strandat 3297.663 kb on - strandat 3297.663 kb on - strandat 3297.665 kb on + strandat 3297.665 kb on + strandat 3297.666 kb on - strandat 3297.666 kb on - strandat 3297.721 kb on - strandat 3297.721 kb on - strandat 3297.740 kb on + strandat 3297.741 kb on - strandat 3297.785 kb on + strandat 3297.808 kb on + strandat 3297.832 kb on + strandat 3297.863 kb on + strandat 3297.863 kb on + strandat 3297.864 kb on - strandat 3297.864 kb on - strandat 3297.864 kb on - strandat 3297.864 kb on - strandat 3297.864 kb on - strandat 3297.897 kb on + strandat 3297.897 kb on + strandat 3298.681 kb on + strandat 3298.696 kb on + strandat 3298.696 kb on + strandat 3298.696 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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3,297,604 + +0.4
3,297,605 - -2.1
3,297,654 - -0.3
3,297,662 + -4.1
3,297,662 + -3.1
3,297,662 + -0.6
3,297,662 + -0.0
3,297,662 + +2.2
3,297,662 + +2.4
3,297,662 + -0.9
3,297,663 - +0.7
3,297,663 - +1.3
3,297,663 - -0.7
3,297,665 + -0.3
3,297,665 + -0.2
3,297,666 - +3.4
3,297,666 - +2.5
3,297,721 - -0.4
3,297,721 - +0.7
3,297,740 + +0.4
3,297,741 - +1.5
3,297,785 + +0.1
3,297,808 + -0.9
3,297,832 + +2.8
3,297,863 + +1.6
3,297,863 + +0.6
3,297,864 - -0.3
3,297,864 - +1.7
3,297,864 - +1.6
3,297,864 - -0.1
3,297,864 - -1.7
3,297,897 + -0.7
3,297,897 + +1.0
3,298,681 + -1.2
3,298,696 + +2.4
3,298,696 + -2.0
3,298,696 + -1.1

Or see this region's nucleotide sequence