Strain Fitness in Escherichia coli ECRC102 around NIAGMN_15375

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nt23S_rrna and 5S_rrna are separated by 94 nucleotides5S_rrna and Thr_trna are separated by 14 nucleotidesThr_trna and 5S_rrna are separated by 39 nucleotides5S_rrna and yhdZ are separated by 230 nucleotidesyhdZ and yhdY are separated by 7 nucleotides NIAGMN_15360: 23S_rrna - 23S ribosomal RNA, at 3,039,942 to 3,042,844 _rrna NIAGMN_15365: 5S_rrna - 5S ribosomal RNA, at 3,042,939 to 3,043,054 _rrna NIAGMN_15370: Thr_trna - tRNA-Thr(ggt), at 3,043,069 to 3,043,144 _trna NIAGMN_15375: 5S_rrna - 5S ribosomal RNA, at 3,043,184 to 3,043,299 _rrna NIAGMN_15380: yhdZ - Uncharacterized amino-acid ABC transporter ATP-binding protein YhdZ, at 3,043,530 to 3,044,288 yhdZ NIAGMN_15385: yhdY - Inner membrane amino-acid ABC transporter permease protein YhdY, at 3,044,296 to 3,045,399 yhdY Position (kb) 3043 3044Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3043.104 kb on + strand, within Thr_trnaat 3043.104 kb on + strand, within Thr_trnaat 3043.150 kb on + strandat 3043.170 kb on + strandat 3043.284 kb on + strand, within 5S_rrnaat 3043.507 kb on - strandat 3043.507 kb on - strandat 3043.521 kb on - strandat 3043.521 kb on - strandat 3043.521 kb on - strandat 3043.532 kb on - strandat 3043.540 kb on - strandat 3043.549 kb on - strandat 3043.615 kb on - strand, within yhdZat 3043.785 kb on - strand, within yhdZat 3043.785 kb on - strand, within yhdZat 3043.800 kb on - strand, within yhdZat 3043.800 kb on - strand, within yhdZat 3043.863 kb on - strand, within yhdZat 3043.898 kb on - strand, within yhdZat 3043.898 kb on - strand, within yhdZat 3043.962 kb on - strand, within yhdZat 3043.962 kb on - strand, within yhdZat 3043.972 kb on - strand, within yhdZat 3044.061 kb on - strand, within yhdZat 3044.077 kb on - strand, within yhdZat 3044.114 kb on + strand, within yhdZat 3044.118 kb on - strand, within yhdZat 3044.118 kb on - strand, within yhdZat 3044.289 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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3,043,104 + Thr_trna NIAGMN_15370 0.46 -0.9
3,043,104 + Thr_trna NIAGMN_15370 0.46 +1.3
3,043,150 + +0.6
3,043,170 + -0.1
3,043,284 + 5S_rrna NIAGMN_15375 0.86 +0.9
3,043,507 - -0.8
3,043,507 - +1.7
3,043,521 - -2.0
3,043,521 - -3.0
3,043,521 - -0.0
3,043,532 - -1.0
3,043,540 - +0.4
3,043,549 - +0.6
3,043,615 - yhdZ NIAGMN_15380 0.11 -3.7
3,043,785 - yhdZ NIAGMN_15380 0.34 +0.8
3,043,785 - yhdZ NIAGMN_15380 0.34 +0.4
3,043,800 - yhdZ NIAGMN_15380 0.36 +2.8
3,043,800 - yhdZ NIAGMN_15380 0.36 -0.8
3,043,863 - yhdZ NIAGMN_15380 0.44 +1.6
3,043,898 - yhdZ NIAGMN_15380 0.48 -0.2
3,043,898 - yhdZ NIAGMN_15380 0.48 +3.0
3,043,962 - yhdZ NIAGMN_15380 0.57 +0.6
3,043,962 - yhdZ NIAGMN_15380 0.57 -0.5
3,043,972 - yhdZ NIAGMN_15380 0.58 +0.9
3,044,061 - yhdZ NIAGMN_15380 0.70 -1.0
3,044,077 - yhdZ NIAGMN_15380 0.72 -3.6
3,044,114 + yhdZ NIAGMN_15380 0.77 +0.1
3,044,118 - yhdZ NIAGMN_15380 0.77 +2.2
3,044,118 - yhdZ NIAGMN_15380 0.77 +0.5
3,044,289 - +0.4

Or see this region's nucleotide sequence