Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt valS and yjgN are separated by 54 nucleotides yjgN and argA are separated by 192 nucleotides argA and rraB are separated by 45 nucleotides
NIAGMN_09665: valS - valine--tRNA ligase, at 1,901,262 to 1,904,117
valS
NIAGMN_09670: yjgN - Inner membrane protein YjgN, at 1,904,172 to 1,905,368
yjgN
NIAGMN_09675: argA - GNAT family N-acetyltransferase, at 1,905,561 to 1,906,064
argA
NIAGMN_09680: rraB - ribonuclease E inhibitor RraB, at 1,906,110 to 1,906,526
rraB
Position (kb) 1904
1905
1906 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1904.115 kb on + strand at 1904.196 kb on - strand at 1904.196 kb on - strand at 1904.196 kb on - strand at 1904.196 kb on - strand at 1904.211 kb on - strand at 1904.284 kb on + strand at 1904.284 kb on + strand at 1904.317 kb on - strand, within yjgN at 1904.317 kb on - strand, within yjgN at 1904.399 kb on - strand, within yjgN at 1904.588 kb on - strand, within yjgN at 1904.633 kb on - strand, within yjgN at 1904.841 kb on - strand, within yjgN at 1904.841 kb on - strand, within yjgN at 1904.841 kb on - strand, within yjgN at 1904.866 kb on - strand, within yjgN at 1904.866 kb on - strand, within yjgN at 1904.914 kb on - strand, within yjgN at 1904.964 kb on - strand, within yjgN at 1905.198 kb on - strand, within yjgN at 1905.240 kb on + strand, within yjgN at 1905.422 kb on - strand at 1905.445 kb on - strand at 1905.520 kb on + strand at 1905.566 kb on + strand at 1905.615 kb on - strand, within argA at 1905.615 kb on - strand, within argA at 1905.681 kb on + strand, within argA at 1905.714 kb on + strand, within argA at 1905.723 kb on + strand, within argA at 1905.723 kb on + strand, within argA at 1905.723 kb on + strand, within argA at 1905.723 kb on + strand, within argA at 1905.723 kb on + strand, within argA at 1905.723 kb on + strand, within argA at 1905.724 kb on - strand, within argA at 1905.724 kb on - strand, within argA at 1905.724 kb on - strand, within argA at 1905.724 kb on - strand, within argA at 1905.744 kb on + strand, within argA at 1905.745 kb on - strand, within argA at 1905.759 kb on + strand, within argA at 1905.759 kb on + strand, within argA at 1905.760 kb on - strand, within argA at 1905.800 kb on - strand, within argA at 1905.840 kb on + strand, within argA at 1905.840 kb on + strand, within argA at 1905.933 kb on + strand, within argA at 1905.933 kb on + strand, within argA at 1905.975 kb on + strand, within argA at 1905.975 kb on + strand, within argA at 1905.975 kb on + strand, within argA at 1905.998 kb on + strand, within argA at 1905.998 kb on + strand, within argA at 1906.107 kb on + strand at 1906.107 kb on + strand at 1906.108 kb on - strand at 1906.108 kb on - strand at 1906.186 kb on + strand, within rraB at 1906.186 kb on + strand, within rraB at 1906.186 kb on + strand, within rraB at 1906.187 kb on - strand, within rraB at 1906.187 kb on - strand, within rraB at 1906.187 kb on - strand, within rraB at 1906.187 kb on - strand, within rraB at 1906.365 kb on - strand, within rraB
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 1,904,115 + +0.3 1,904,196 - +0.5 1,904,196 - +0.8 1,904,196 - -0.7 1,904,196 - -0.4 1,904,211 - +0.3 1,904,284 + +1.6 1,904,284 + +3.7 1,904,317 - yjgN NIAGMN_09670 0.12 +0.4 1,904,317 - yjgN NIAGMN_09670 0.12 +1.3 1,904,399 - yjgN NIAGMN_09670 0.19 -1.4 1,904,588 - yjgN NIAGMN_09670 0.35 +0.6 1,904,633 - yjgN NIAGMN_09670 0.39 +3.1 1,904,841 - yjgN NIAGMN_09670 0.56 +0.8 1,904,841 - yjgN NIAGMN_09670 0.56 -1.9 1,904,841 - yjgN NIAGMN_09670 0.56 +0.8 1,904,866 - yjgN NIAGMN_09670 0.58 +2.9 1,904,866 - yjgN NIAGMN_09670 0.58 -0.0 1,904,914 - yjgN NIAGMN_09670 0.62 -0.1 1,904,964 - yjgN NIAGMN_09670 0.66 -0.5 1,905,198 - yjgN NIAGMN_09670 0.86 -1.0 1,905,240 + yjgN NIAGMN_09670 0.89 -0.2 1,905,422 - +0.7 1,905,445 - +0.8 1,905,520 + +0.6 1,905,566 + -2.4 1,905,615 - argA NIAGMN_09675 0.11 -1.8 1,905,615 - argA NIAGMN_09675 0.11 +0.5 1,905,681 + argA NIAGMN_09675 0.24 -0.3 1,905,714 + argA NIAGMN_09675 0.30 +0.3 1,905,723 + argA NIAGMN_09675 0.32 -0.1 1,905,723 + argA NIAGMN_09675 0.32 -0.3 1,905,723 + argA NIAGMN_09675 0.32 -0.1 1,905,723 + argA NIAGMN_09675 0.32 -0.3 1,905,723 + argA NIAGMN_09675 0.32 +1.8 1,905,723 + argA NIAGMN_09675 0.32 +1.1 1,905,724 - argA NIAGMN_09675 0.32 +0.5 1,905,724 - argA NIAGMN_09675 0.32 -0.8 1,905,724 - argA NIAGMN_09675 0.32 +0.1 1,905,724 - argA NIAGMN_09675 0.32 -1.8 1,905,744 + argA NIAGMN_09675 0.36 -0.3 1,905,745 - argA NIAGMN_09675 0.37 -0.0 1,905,759 + argA NIAGMN_09675 0.39 -0.5 1,905,759 + argA NIAGMN_09675 0.39 -1.5 1,905,760 - argA NIAGMN_09675 0.39 +0.5 1,905,800 - argA NIAGMN_09675 0.47 -0.0 1,905,840 + argA NIAGMN_09675 0.55 +1.4 1,905,840 + argA NIAGMN_09675 0.55 -0.8 1,905,933 + argA NIAGMN_09675 0.74 -0.8 1,905,933 + argA NIAGMN_09675 0.74 +2.1 1,905,975 + argA NIAGMN_09675 0.82 +0.6 1,905,975 + argA NIAGMN_09675 0.82 -0.2 1,905,975 + argA NIAGMN_09675 0.82 -0.5 1,905,998 + argA NIAGMN_09675 0.87 +0.1 1,905,998 + argA NIAGMN_09675 0.87 -1.1 1,906,107 + +0.9 1,906,107 + +0.6 1,906,108 - +0.3 1,906,108 - +1.8 1,906,186 + rraB NIAGMN_09680 0.18 +1.0 1,906,186 + rraB NIAGMN_09680 0.18 -1.6 1,906,186 + rraB NIAGMN_09680 0.18 -0.7 1,906,187 - rraB NIAGMN_09680 0.18 -1.4 1,906,187 - rraB NIAGMN_09680 0.18 -0.1 1,906,187 - rraB NIAGMN_09680 0.18 -3.2 1,906,187 - rraB NIAGMN_09680 0.18 +2.6 1,906,365 - rraB NIAGMN_09680 0.61 -3.1
Or see this region's nucleotide sequence