Strain Fitness in Escherichia coli ECRC102 around NIAGMN_09135

Experiment: L-Arabinose

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Arabinose
1,772,137	+	prfC	NIAGMN_09130	0.43	-0.7
1,772,137	+	prfC	NIAGMN_09130	0.43	-2.2
1,772,138	-	prfC	NIAGMN_09130	0.43	+0.6
1,772,155	-	prfC	NIAGMN_09130	0.45	+0.2
1,772,171	-	prfC	NIAGMN_09130	0.46	+3.8
1,772,171	-	prfC	NIAGMN_09130	0.46	-1.5
1,772,171	-	prfC	NIAGMN_09130	0.46	+2.8
1,772,171	-	prfC	NIAGMN_09130	0.46	+0.0
1,772,235	+	prfC	NIAGMN_09130	0.50	+1.8
1,772,235	+	prfC	NIAGMN_09130	0.50	+2.8
1,772,236	-	prfC	NIAGMN_09130	0.50	-1.9
1,772,236	-	prfC	NIAGMN_09130	0.50	+1.5
1,772,266	-	prfC	NIAGMN_09130	0.52	-1.3
1,772,416	-	prfC	NIAGMN_09130	0.61	-1.9
1,772,460	-	prfC	NIAGMN_09130	0.64	-1.7
1,772,465	+	prfC	NIAGMN_09130	0.64	+2.0
1,772,465	+	prfC	NIAGMN_09130	0.64	+0.6
1,772,465	+	prfC	NIAGMN_09130	0.64	-1.1
1,772,466	-	prfC	NIAGMN_09130	0.64	-1.0
1,772,479	-	prfC	NIAGMN_09130	0.65	+1.5
1,772,479	-	prfC	NIAGMN_09130	0.65	-1.5
1,772,480	+	prfC	NIAGMN_09130	0.65	+0.5
1,772,480	+	prfC	NIAGMN_09130	0.65	-1.7
1,772,481	-	prfC	NIAGMN_09130	0.65	-1.7
1,772,481	-	prfC	NIAGMN_09130	0.65	-0.7
1,772,481	-	prfC	NIAGMN_09130	0.65	-2.9
1,772,490	-	prfC	NIAGMN_09130	0.66	+0.3
1,772,490	-	prfC	NIAGMN_09130	0.66	+3.9
1,772,616	+	prfC	NIAGMN_09130	0.74	+0.9
1,772,617	-	prfC	NIAGMN_09130	0.74	-0.2
1,772,649	+	prfC	NIAGMN_09130	0.76	-1.6
1,772,650	-	prfC	NIAGMN_09130	0.76	-1.7
1,772,665	-	prfC	NIAGMN_09130	0.77	+1.5
1,772,738	+	prfC	NIAGMN_09130	0.81	-0.0
1,772,738	+	prfC	NIAGMN_09130	0.81	-0.7
1,772,738	+	prfC	NIAGMN_09130	0.81	-1.4
1,772,738	+	prfC	NIAGMN_09130	0.81	-0.9
1,772,738	+	prfC	NIAGMN_09130	0.81	-1.3
1,772,739	-	prfC	NIAGMN_09130	0.81	+1.2
1,772,739	-	prfC	NIAGMN_09130	0.81	-0.1
1,772,742	+	prfC	NIAGMN_09130	0.81	+0.5
1,772,743	-	prfC	NIAGMN_09130	0.82	+0.9
1,772,823	+	prfC	NIAGMN_09130	0.87	-2.7
1,772,823	+	prfC	NIAGMN_09130	0.87	-2.3
1,772,823	+	prfC	NIAGMN_09130	0.87	+0.3
1,772,824	-	prfC	NIAGMN_09130	0.87	+0.5
1,772,824	-	prfC	NIAGMN_09130	0.87	-1.6
1,772,824	-	prfC	NIAGMN_09130	0.87	-1.7
1,772,824	-	prfC	NIAGMN_09130	0.87	-0.2
1,772,824	-	prfC	NIAGMN_09130	0.87	-2.1
1,772,824	-	prfC	NIAGMN_09130	0.87	-1.3
1,772,826	+	prfC	NIAGMN_09130	0.87	+0.3
1,772,826	+	prfC	NIAGMN_09130	0.87	+3.8
1,772,826	+	prfC	NIAGMN_09130	0.87	+1.1
1,772,827	-	prfC	NIAGMN_09130	0.87	-0.2
1,772,827	-	prfC	NIAGMN_09130	0.87	-0.8
1,772,871	+	prfC	NIAGMN_09130	0.90	+1.3
1,772,872	-	prfC	NIAGMN_09130	0.90	+2.5
1,772,900	-				-3.0
1,772,904	+				+0.7
1,772,905	-				+1.3
1,772,956	-				-1.5
1,772,956	-				-1.7
1,772,956	-				+1.2
1,772,961	+				-0.3
1,772,982	+				-3.6
1,773,021	-				+2.3
1,773,037	-				+1.4
1,773,098	+				+0.4
1,773,103	+				+0.6
1,773,104	-				-0.0
1,773,135	+				+0.4
1,773,135	+				+1.8
1,773,398	+	yjjG	NIAGMN_09135	0.40	+0.8
1,773,399	-	yjjG	NIAGMN_09135	0.40	-1.3
1,773,399	-	yjjG	NIAGMN_09135	0.40	-1.3
1,773,493	-	yjjG	NIAGMN_09135	0.54	+0.3
1,773,543	+	yjjG	NIAGMN_09135	0.61	+2.1
1,773,546	+	yjjG	NIAGMN_09135	0.62	+0.1
1,773,546	+	yjjG	NIAGMN_09135	0.62	+0.5
1,773,547	-	yjjG	NIAGMN_09135	0.62	-2.5
1,773,622	+	yjjG	NIAGMN_09135	0.73	-1.8
1,773,623	-	yjjG	NIAGMN_09135	0.73	-0.3
1,773,680	+	yjjG	NIAGMN_09135	0.82	-1.7
1,773,681	-	yjjG	NIAGMN_09135	0.82	-2.2
1,773,681	-	yjjG	NIAGMN_09135	0.82	-1.6
1,773,717	-	yjjG	NIAGMN_09135	0.87	-2.5
1,773,760	-				+1.2
1,773,805	+				-0.3
1,773,806	-				-0.5
1,773,820	+				+3.2
1,773,820	+				-3.4
1,773,821	-				-0.6
1,773,821	-				-1.4
1,773,821	-				+0.7
1,773,824	+				+1.4
1,773,824	+				-0.9
1,773,824	+				-0.4
1,773,825	-				+0.3
1,773,825	-				+1.2
1,773,825	-				+2.5
1,773,825	-				-0.4
1,773,878	-	rimI	NIAGMN_09140	0.13	+1.0
1,773,878	-	rimI	NIAGMN_09140	0.13	-1.1
1,773,880	+	rimI	NIAGMN_09140	0.14	+1.4
1,773,880	+	rimI	NIAGMN_09140	0.14	+0.3
1,773,881	-	rimI	NIAGMN_09140	0.14	+1.0
1,773,881	-	rimI	NIAGMN_09140	0.14	+1.5
1,773,881	-	rimI	NIAGMN_09140	0.14	+0.8
1,773,906	-	rimI	NIAGMN_09140	0.19	+0.9
1,773,913	-	rimI	NIAGMN_09140	0.21	+1.8
1,773,923	-	rimI	NIAGMN_09140	0.23	+2.0
1,773,967	-	rimI	NIAGMN_09140	0.33	-1.4
1,773,967	-	rimI	NIAGMN_09140	0.33	-0.7
1,773,967	-	rimI	NIAGMN_09140	0.33	+0.7
1,773,967	-	rimI	NIAGMN_09140	0.33	-0.1
1,773,967	-	rimI	NIAGMN_09140	0.33	+1.5
1,774,061	+	rimI	NIAGMN_09140	0.54	+0.1
1,774,061	+	rimI	NIAGMN_09140	0.54	+1.0
1,774,073	+	rimI	NIAGMN_09140	0.57	-1.1
1,774,073	+	rimI	NIAGMN_09140	0.57	+0.6
1,774,073	+	rimI	NIAGMN_09140	0.57	-2.3
1,774,073	+	rimI	NIAGMN_09140	0.57	+1.0
1,774,074	-	rimI	NIAGMN_09140	0.57	+1.4
1,774,074	-	rimI	NIAGMN_09140	0.57	+1.6
1,774,074	-	rimI	NIAGMN_09140	0.57	+1.4
1,774,098	-	rimI	NIAGMN_09140	0.62	+1.4
1,774,147	+	rimI	NIAGMN_09140	0.73	+1.4
1,774,147	+	rimI	NIAGMN_09140	0.73	+1.0
1,774,148	-	rimI	NIAGMN_09140	0.74	+2.5
1,774,219	+	rimI	NIAGMN_09140	0.89	+0.4
1,774,265	+				-1.0
1,774,265	+				-0.2
1,774,265	+				+0.2
1,774,265	+				+0.6
1,774,265	+				+0.2
1,774,266	-				+2.2
1,774,266	-				+1.0
1,774,266	-				-1.0
1,774,266	-				+0.1
1,774,266	-				-0.2
1,774,266	-				-1.8
1,774,266	-				-0.4
1,774,316	-	holD	NIAGMN_09145	0.20	-0.2
1,774,466	-	holD	NIAGMN_09145	0.56	+0.2
1,774,621	+				-1.0
1,774,621	+				+1.8
1,774,680	-				+1.3
1,774,709	+				+0.8
1,774,709	+				+0.2
1,774,709	+				+0.4
1,774,709	+				+0.8
1,774,709	+				+1.6
1,774,709	+				+0.2
1,774,709	+				+0.1
1,774,709	+				-2.7
1,774,709	+				-1.2
1,774,709	+				+0.2
1,774,709	+				+0.7
1,774,709	+				+0.1
1,774,709	+				-2.9
1,774,709	+				-1.2
1,774,709	+				-2.2
1,774,709	+				-0.2
1,774,709	+				+1.6
1,774,709	+				+0.1
1,774,710	-				+0.7
1,774,710	-				+0.3
1,774,710	-				-0.0
1,774,710	-				+0.5
1,774,710	-				-2.0
1,774,710	-				-2.3
1,774,710	-				-0.6
1,774,710	-				-0.3
1,774,710	-				+2.9
1,774,710	-				-2.9
1,774,710	-				-0.2
1,774,710	-				-0.2
1,774,710	-				+0.5
1,774,710	-				-0.9
1,774,715	+				-2.4
1,774,715	+				-0.9
1,774,715	+				+0.0
1,774,718	-				+2.4