Strain Fitness in Escherichia coli ECRC102 around NIAGMN_08950

Experiment: L-Arabinose

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Arabinose
1,736,015	+	yaaA	NIAGMN_08940	0.57	-0.0
1,736,016	-	yaaA	NIAGMN_08940	0.58	-1.5
1,736,072	+	yaaA	NIAGMN_08940	0.65	-1.4
1,736,072	+	yaaA	NIAGMN_08940	0.65	-0.7
1,736,091	+	yaaA	NIAGMN_08940	0.67	+0.8
1,736,171	+	yaaA	NIAGMN_08940	0.77	-0.8
1,736,176	+	yaaA	NIAGMN_08940	0.78	-1.3
1,736,177	-	yaaA	NIAGMN_08940	0.78	-1.0
1,736,177	-	yaaA	NIAGMN_08940	0.78	-2.4
1,736,187	+	yaaA	NIAGMN_08940	0.80	+2.2
1,736,187	+	yaaA	NIAGMN_08940	0.80	-0.5
1,736,187	+	yaaA	NIAGMN_08940	0.80	-0.7
1,736,187	+	yaaA	NIAGMN_08940	0.80	-1.5
1,736,187	+	yaaA	NIAGMN_08940	0.80	+0.9
1,736,268	-				-0.1
1,736,280	+				-1.6
1,736,351	+				+0.4
1,736,352	-				+2.0
1,736,352	-				-2.2
1,736,411	+				-0.5
1,736,413	+				+0.7
1,736,413	+				-0.5
1,736,414	-				+0.3
1,736,430	-				+2.2
1,736,439	-				+3.0
1,736,554	+	yaaX	NIAGMN_08945	0.19	+0.8
1,736,613	+	yaaX	NIAGMN_08945	0.39	-0.8
1,736,613	+	yaaX	NIAGMN_08945	0.39	+0.1
1,736,614	-	yaaX	NIAGMN_08945	0.39	-1.9
1,736,687	+	yaaX	NIAGMN_08945	0.64	+1.3
1,736,688	-	yaaX	NIAGMN_08945	0.64	+3.0
1,736,716	+	yaaX	NIAGMN_08945	0.73	+0.2
1,736,716	+	yaaX	NIAGMN_08945	0.73	-0.7
1,736,777	-				+1.1
1,736,777	-				+2.8
1,736,777	-				+0.3
1,736,777	-				-0.8
1,736,800	-				+1.1
1,736,808	+				+0.5
1,736,808	+				-1.3
1,736,808	+				-1.0
1,736,809	-				-2.7
1,736,865	+				-1.7
1,736,866	-				-1.7
1,736,880	+				+1.3
1,736,996	-				-3.5
1,736,996	-				-1.9
1,737,002	+				+0.6
1,737,002	+				+1.2
1,737,002	+				+0.4
1,737,002	+				-0.2
1,737,003	-				+0.1
1,737,003	-				-1.8
1,737,003	-				-1.3
1,737,003	-				-0.9
1,737,003	-				-3.4
1,737,003	-				-1.1
1,737,010	-				-0.6
1,737,077	+				-2.7
1,737,148	+	thrC	NIAGMN_08950	0.11	-1.4
1,737,149	-	thrC	NIAGMN_08950	0.11	-3.7
1,737,222	+	thrC	NIAGMN_08950	0.17	-3.0
1,737,222	+	thrC	NIAGMN_08950	0.17	-1.9
1,737,222	+	thrC	NIAGMN_08950	0.17	-4.5
1,737,252	+	thrC	NIAGMN_08950	0.19	-1.0
1,737,253	-	thrC	NIAGMN_08950	0.19	-1.0
1,737,488	-	thrC	NIAGMN_08950	0.37	-4.4
1,737,622	-	thrC	NIAGMN_08950	0.48	-1.1
1,737,622	-	thrC	NIAGMN_08950	0.48	-1.8
1,737,653	-	thrC	NIAGMN_08950	0.50	-4.4
1,737,661	+	thrC	NIAGMN_08950	0.51	-0.6
1,737,781	+	thrC	NIAGMN_08950	0.60	-3.0
1,737,781	+	thrC	NIAGMN_08950	0.60	-3.1
1,737,781	+	thrC	NIAGMN_08950	0.60	-2.6
1,737,781	+	thrC	NIAGMN_08950	0.60	-2.2
1,737,782	-	thrC	NIAGMN_08950	0.60	-3.5
1,737,782	-	thrC	NIAGMN_08950	0.60	-4.7
1,737,782	-	thrC	NIAGMN_08950	0.60	-3.9
1,737,782	-	thrC	NIAGMN_08950	0.60	-2.6
1,737,782	-	thrC	NIAGMN_08950	0.60	-5.5
1,737,826	-	thrC	NIAGMN_08950	0.64	-4.1
1,737,955	+	thrC	NIAGMN_08950	0.74	-3.3
1,737,956	-	thrC	NIAGMN_08950	0.74	-3.9
1,737,956	-	thrC	NIAGMN_08950	0.74	-0.7
1,738,277	-				-0.2
1,738,284	+				-3.0
1,738,284	+				-2.7
1,738,285	-				-3.1
1,738,285	-				-4.7
1,738,297	-				-3.2
1,738,339	+				-2.3
1,738,340	-				-2.5
1,738,369	-				-1.3
1,738,369	-				-2.5
1,738,369	-				-0.9
1,738,453	+	thrB	NIAGMN_08955	0.17	-0.2
1,738,454	-	thrB	NIAGMN_08955	0.17	-2.5
1,738,527	+	thrB	NIAGMN_08955	0.25	-0.5
1,738,645	-	thrB	NIAGMN_08955	0.38	-1.9
1,738,778	-	thrB	NIAGMN_08955	0.52	-2.6
1,738,778	-	thrB	NIAGMN_08955	0.52	-1.8
1,738,809	+	thrB	NIAGMN_08955	0.55	-2.3
1,738,809	+	thrB	NIAGMN_08955	0.55	-2.3
1,738,940	+	thrB	NIAGMN_08955	0.69	-2.4
1,738,941	-	thrB	NIAGMN_08955	0.69	-3.6
1,738,941	-	thrB	NIAGMN_08955	0.69	-5.6
1,738,961	-	thrB	NIAGMN_08955	0.71	-3.7
1,739,032	-	thrB	NIAGMN_08955	0.79	-1.4
1,739,032	-	thrB	NIAGMN_08955	0.79	-4.6
1,739,123	+	thrB	NIAGMN_08955	0.89	-3.7
1,739,123	+	thrB	NIAGMN_08955	0.89	-1.7
1,739,123	+	thrB	NIAGMN_08955	0.89	-3.2
1,739,123	+	thrB	NIAGMN_08955	0.89	-1.9
1,739,123	+	thrB	NIAGMN_08955	0.89	-3.3
1,739,124	-	thrB	NIAGMN_08955	0.89	-2.7
1,739,124	-	thrB	NIAGMN_08955	0.89	-5.3
1,739,124	-	thrB	NIAGMN_08955	0.89	-2.1
1,739,124	-	thrB	NIAGMN_08955	0.89	-2.4
1,739,124	-	thrB	NIAGMN_08955	0.89	-2.1
1,739,191	+				-2.3
1,739,222	-				-1.1
1,739,238	+				-1.6
1,739,239	-				-1.3
1,739,256	-				-0.7
1,739,259	+				-0.6
1,739,260	-				-0.9