Strain Fitness in Escherichia coli ECRC102 around NIAGMN_08275

Experiment: L-Arabinose

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Arabinose
1,591,668	+	yadE	NIAGMN_08270	0.25	+1.0
1,591,797	-	yadE	NIAGMN_08270	0.35	+0.5
1,591,825	+	yadE	NIAGMN_08270	0.38	+0.2
1,591,884	-	yadE	NIAGMN_08270	0.42	+1.4
1,591,884	-	yadE	NIAGMN_08270	0.42	-1.1
1,591,917	-	yadE	NIAGMN_08270	0.45	-3.5
1,592,024	+	yadE	NIAGMN_08270	0.54	-0.6
1,592,025	-	yadE	NIAGMN_08270	0.54	-0.2
1,592,025	-	yadE	NIAGMN_08270	0.54	-2.5
1,592,025	-	yadE	NIAGMN_08270	0.54	-1.7
1,592,061	-	yadE	NIAGMN_08270	0.57	+0.9
1,592,061	-	yadE	NIAGMN_08270	0.57	+0.4
1,592,068	+	yadE	NIAGMN_08270	0.57	-0.6
1,592,068	+	yadE	NIAGMN_08270	0.57	-1.3
1,592,068	+	yadE	NIAGMN_08270	0.57	-1.1
1,592,119	+	yadE	NIAGMN_08270	0.62	+0.7
1,592,119	+	yadE	NIAGMN_08270	0.62	+0.8
1,592,119	+	yadE	NIAGMN_08270	0.62	-2.3
1,592,119	+	yadE	NIAGMN_08270	0.62	+1.9
1,592,120	-	yadE	NIAGMN_08270	0.62	+1.2
1,592,252	-	yadE	NIAGMN_08270	0.72	-3.8
1,592,277	+	yadE	NIAGMN_08270	0.74	-2.1
1,592,277	+	yadE	NIAGMN_08270	0.74	-1.1
1,592,278	-	yadE	NIAGMN_08270	0.74	-2.4
1,592,278	-	yadE	NIAGMN_08270	0.74	+0.4
1,592,379	-	yadE	NIAGMN_08270	0.83	+1.3
1,592,394	-	yadE	NIAGMN_08270	0.84	+1.8
1,592,394	-	yadE	NIAGMN_08270	0.84	+1.8
1,592,402	-	yadE	NIAGMN_08270	0.85	+0.0
1,592,402	-	yadE	NIAGMN_08270	0.85	-1.1
1,592,404	+	yadE	NIAGMN_08270	0.85	-0.7
1,592,516	+				+1.5
1,592,517	-				+2.6
1,592,518	+				-0.3
1,592,518	+				+0.2
1,592,518	+				+0.3
1,592,519	-				+2.1
1,592,519	-				+0.7
1,592,519	-				-0.2
1,592,519	-				-0.7
1,592,573	+				-1.7
1,592,587	+				+2.8
1,592,588	-				+0.6
1,592,588	-				-2.4
1,592,629	-				+0.2
1,592,660	-				+0.0
1,592,660	-				-0.3
1,592,666	-				+1.3
1,592,673	-				-0.1
1,592,717	+	yadI	NIAGMN_08275	0.14	-0.9
1,592,718	-	yadI	NIAGMN_08275	0.14	-0.6
1,592,720	+	yadI	NIAGMN_08275	0.15	-1.5
1,592,721	-	yadI	NIAGMN_08275	0.15	-0.4
1,592,750	+	yadI	NIAGMN_08275	0.22	+0.7
1,592,859	+	yadI	NIAGMN_08275	0.46	+2.5
1,592,859	+	yadI	NIAGMN_08275	0.46	-1.7
1,592,895	+	yadI	NIAGMN_08275	0.54	-0.1
1,592,970	-	yadI	NIAGMN_08275	0.71	+1.2
1,592,970	-	yadI	NIAGMN_08275	0.71	+0.1
1,592,973	-	yadI	NIAGMN_08275	0.72	+0.4
1,592,973	-	yadI	NIAGMN_08275	0.72	-2.2
1,592,973	-	yadI	NIAGMN_08275	0.72	+2.1
1,592,980	-	yadI	NIAGMN_08275	0.74	+0.2
1,593,078	-				-2.1
1,593,078	-				+0.1
1,593,090	+				-0.9
1,593,091	-				-2.7
1,593,091	-				-1.5
1,593,091	-				+2.8
1,593,091	-				+0.4
1,593,124	+				+1.1
1,593,196	-				-0.3
1,593,196	-				-4.0
1,593,201	+				-1.2
1,593,202	-				-1.4
1,593,202	-				+0.6
1,593,250	-				-0.4
1,593,262	+				-1.1
1,593,263	-				+0.5
1,593,276	-				+0.1
1,593,286	+	yadH	NIAGMN_08280	0.11	+3.2
1,593,311	-	yadH	NIAGMN_08280	0.14	-3.0
1,593,343	+	yadH	NIAGMN_08280	0.19	+0.5
1,593,344	-	yadH	NIAGMN_08280	0.19	-0.6
1,593,346	-	yadH	NIAGMN_08280	0.19	-2.2
1,593,405	+	yadH	NIAGMN_08280	0.27	-0.0
1,593,406	-	yadH	NIAGMN_08280	0.27	+0.2
1,593,423	+	yadH	NIAGMN_08280	0.29	-2.4
1,593,423	+	yadH	NIAGMN_08280	0.29	+0.4
1,593,424	-	yadH	NIAGMN_08280	0.29	-0.5
1,593,539	+	yadH	NIAGMN_08280	0.44	-2.0
1,593,540	-	yadH	NIAGMN_08280	0.44	+3.1
1,593,645	+	yadH	NIAGMN_08280	0.58	+0.7
1,593,646	-	yadH	NIAGMN_08280	0.58	-0.8
1,593,646	-	yadH	NIAGMN_08280	0.58	+0.3
1,593,646	-	yadH	NIAGMN_08280	0.58	+1.7
1,593,681	-	yadH	NIAGMN_08280	0.62	-1.8
1,593,697	+	yadH	NIAGMN_08280	0.64	-0.1
1,593,701	-	yadH	NIAGMN_08280	0.65	+1.1
1,593,701	-	yadH	NIAGMN_08280	0.65	+0.5
1,593,799	-	yadH	NIAGMN_08280	0.78	+0.1
1,593,799	-	yadH	NIAGMN_08280	0.78	+1.3
1,593,799	-	yadH	NIAGMN_08280	0.78	+0.7
1,593,815	-	yadH	NIAGMN_08280	0.80	-2.3
1,593,851	-	yadH	NIAGMN_08280	0.84	-1.0
1,593,851	-	yadH	NIAGMN_08280	0.84	-1.6
1,593,910	+				-1.9
1,593,958	-				-0.0
1,594,035	+				-2.6
1,594,036	-				+0.4
1,594,042	-				+1.0
1,594,042	-				+0.4
1,594,045	+				+0.0
1,594,045	+				-1.9
1,594,045	+				+0.6
1,594,045	+				+3.3
1,594,045	+				-0.6
1,594,046	-				-0.9
1,594,046	-				-0.0
1,594,046	-				+0.3
1,594,046	-				-1.7
1,594,046	-				+0.1
1,594,046	-				+2.6
1,594,048	+				-2.6
1,594,048	+				-1.1
1,594,049	-				-2.3
1,594,070	-	yadG	NIAGMN_08285	0.11	+0.1
1,594,077	+	yadG	NIAGMN_08285	0.12	+2.4
1,594,078	-	yadG	NIAGMN_08285	0.12	-0.8
1,594,078	-	yadG	NIAGMN_08285	0.12	-0.6
1,594,082	-	yadG	NIAGMN_08285	0.12	-1.0
1,594,082	-	yadG	NIAGMN_08285	0.12	-0.2