Strain Fitness in Escherichia coli ECRC102 around NIAGMN_05920

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfdrA and allD are separated by 316 nucleotidesallD and allC are separated by 21 nucleotides NIAGMN_05915: fdrA - Protein FdrA, at 1,100,185 to 1,101,852 fdrA NIAGMN_05920: allD - ureidoglycolate dehydrogenase, at 1,102,169 to 1,103,218 allD NIAGMN_05925: allC - allantoate deiminase, at 1,103,240 to 1,104,475 allC Position (kb) 1102 1103 1104Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1101.325 kb on - strand, within fdrAat 1101.610 kb on - strand, within fdrAat 1101.712 kb on - strandat 1101.716 kb on - strandat 1101.716 kb on - strandat 1101.900 kb on - strandat 1102.101 kb on + strandat 1102.200 kb on + strandat 1102.319 kb on + strand, within allDat 1102.404 kb on + strand, within allDat 1102.404 kb on + strand, within allDat 1102.404 kb on + strand, within allDat 1102.626 kb on - strand, within allDat 1102.628 kb on + strand, within allDat 1102.633 kb on + strand, within allDat 1102.636 kb on + strand, within allDat 1102.681 kb on + strand, within allDat 1102.744 kb on + strand, within allDat 1102.744 kb on + strand, within allDat 1102.744 kb on + strand, within allDat 1102.744 kb on + strand, within allDat 1102.744 kb on + strand, within allDat 1102.744 kb on + strand, within allDat 1102.744 kb on + strand, within allDat 1102.745 kb on - strand, within allDat 1102.809 kb on + strand, within allDat 1102.810 kb on - strand, within allDat 1102.810 kb on - strand, within allDat 1102.810 kb on - strand, within allDat 1102.923 kb on - strand, within allDat 1102.960 kb on - strand, within allDat 1102.966 kb on - strand, within allDat 1103.189 kb on + strandat 1103.245 kb on + strandat 1103.265 kb on + strandat 1103.769 kb on + strand, within allCat 1103.836 kb on + strand, within allCat 1103.837 kb on - strand, within allCat 1103.887 kb on + strand, within allCat 1103.957 kb on + strand, within allCat 1103.958 kb on - strand, within allCat 1104.144 kb on + strand, within allCat 1104.144 kb on + strand, within allCat 1104.201 kb on + strand, within allCat 1104.201 kb on + strand, within allC

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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1,101,325 - fdrA NIAGMN_05915 0.68 -1.8
1,101,610 - fdrA NIAGMN_05915 0.85 +0.1
1,101,712 - +0.8
1,101,716 - -0.9
1,101,716 - -2.1
1,101,900 - -1.7
1,102,101 + +1.3
1,102,200 + +2.6
1,102,319 + allD NIAGMN_05920 0.14 -0.4
1,102,404 + allD NIAGMN_05920 0.22 +1.2
1,102,404 + allD NIAGMN_05920 0.22 -1.4
1,102,404 + allD NIAGMN_05920 0.22 +0.1
1,102,626 - allD NIAGMN_05920 0.44 -0.7
1,102,628 + allD NIAGMN_05920 0.44 -2.8
1,102,633 + allD NIAGMN_05920 0.44 -1.3
1,102,636 + allD NIAGMN_05920 0.44 -0.6
1,102,681 + allD NIAGMN_05920 0.49 +0.0
1,102,744 + allD NIAGMN_05920 0.55 -1.1
1,102,744 + allD NIAGMN_05920 0.55 -2.0
1,102,744 + allD NIAGMN_05920 0.55 +0.4
1,102,744 + allD NIAGMN_05920 0.55 +3.2
1,102,744 + allD NIAGMN_05920 0.55 -0.4
1,102,744 + allD NIAGMN_05920 0.55 +1.5
1,102,744 + allD NIAGMN_05920 0.55 -0.2
1,102,745 - allD NIAGMN_05920 0.55 +0.7
1,102,809 + allD NIAGMN_05920 0.61 -0.4
1,102,810 - allD NIAGMN_05920 0.61 -1.0
1,102,810 - allD NIAGMN_05920 0.61 +2.7
1,102,810 - allD NIAGMN_05920 0.61 -0.6
1,102,923 - allD NIAGMN_05920 0.72 +1.6
1,102,960 - allD NIAGMN_05920 0.75 +1.0
1,102,966 - allD NIAGMN_05920 0.76 -1.5
1,103,189 + +1.0
1,103,245 + -2.7
1,103,265 + +0.5
1,103,769 + allC NIAGMN_05925 0.43 -0.9
1,103,836 + allC NIAGMN_05925 0.48 -0.9
1,103,837 - allC NIAGMN_05925 0.48 -0.5
1,103,887 + allC NIAGMN_05925 0.52 +1.3
1,103,957 + allC NIAGMN_05925 0.58 -1.9
1,103,958 - allC NIAGMN_05925 0.58 -1.0
1,104,144 + allC NIAGMN_05925 0.73 +0.7
1,104,144 + allC NIAGMN_05925 0.73 -0.9
1,104,201 + allC NIAGMN_05925 0.78 -0.2
1,104,201 + allC NIAGMN_05925 0.78 -0.8

Or see this region's nucleotide sequence