Strain Fitness in Escherichia coli ECRC102 around NIAGMN_05785

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpAAR and NIAGMN_05785 are separated by 17 nucleotidesNIAGMN_05785 and rhsA are separated by 168 nucleotides NIAGMN_05780: pAAR - type IV secretion protein Rhs, at 1,068,062 to 1,072,912 pAAR NIAGMN_05785: NIAGMN_05785 - hypothetical protein, at 1,072,930 to 1,073,337 _05785 NIAGMN_05790: rhsA - type IV secretion protein Rhs, at 1,073,506 to 1,074,840 rhsA Position (kb) 1072 1073 1074Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1071.933 kb on - strand, within pAARat 1071.953 kb on - strand, within pAARat 1071.997 kb on - strand, within pAARat 1072.029 kb on + strand, within pAARat 1072.275 kb on - strand, within pAARat 1072.332 kb on - strand, within pAARat 1072.352 kb on + strand, within pAARat 1072.352 kb on + strand, within pAARat 1072.353 kb on - strand, within pAARat 1072.353 kb on - strand, within pAARat 1072.403 kb on + strand, within pAARat 1072.403 kb on + strand, within pAARat 1072.425 kb on - strand, within pAARat 1072.427 kb on - strand, within pAARat 1072.447 kb on + strandat 1072.448 kb on - strandat 1072.449 kb on + strandat 1072.450 kb on - strandat 1072.498 kb on - strandat 1072.535 kb on - strandat 1072.535 kb on - strandat 1073.372 kb on + strandat 1073.424 kb on - strandat 1073.554 kb on + strandat 1073.561 kb on - strandat 1073.677 kb on + strand, within rhsAat 1073.810 kb on - strand, within rhsAat 1073.896 kb on - strand, within rhsAat 1073.932 kb on + strand, within rhsAat 1073.932 kb on + strand, within rhsAat 1073.932 kb on + strand, within rhsAat 1073.933 kb on - strand, within rhsAat 1074.218 kb on - strand, within rhsAat 1074.296 kb on - strand, within rhsAat 1074.296 kb on - strand, within rhsAat 1074.296 kb on - strand, within rhsAat 1074.296 kb on - strand, within rhsA

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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1,071,933 - pAAR NIAGMN_05780 0.80 +3.0
1,071,953 - pAAR NIAGMN_05780 0.80 -0.8
1,071,997 - pAAR NIAGMN_05780 0.81 -1.4
1,072,029 + pAAR NIAGMN_05780 0.82 -2.4
1,072,275 - pAAR NIAGMN_05780 0.87 -0.7
1,072,332 - pAAR NIAGMN_05780 0.88 -0.0
1,072,352 + pAAR NIAGMN_05780 0.88 +0.6
1,072,352 + pAAR NIAGMN_05780 0.88 +1.4
1,072,353 - pAAR NIAGMN_05780 0.88 -0.2
1,072,353 - pAAR NIAGMN_05780 0.88 +0.9
1,072,403 + pAAR NIAGMN_05780 0.89 -0.6
1,072,403 + pAAR NIAGMN_05780 0.89 -0.2
1,072,425 - pAAR NIAGMN_05780 0.90 +1.4
1,072,427 - pAAR NIAGMN_05780 0.90 -3.1
1,072,447 + +0.6
1,072,448 - +1.0
1,072,449 + -3.6
1,072,450 - -0.4
1,072,498 - +1.4
1,072,535 - +0.4
1,072,535 - -0.6
1,073,372 + +1.0
1,073,424 - +2.1
1,073,554 + -0.9
1,073,561 - +1.3
1,073,677 + rhsA NIAGMN_05790 0.13 -0.1
1,073,810 - rhsA NIAGMN_05790 0.23 -2.4
1,073,896 - rhsA NIAGMN_05790 0.29 -0.9
1,073,932 + rhsA NIAGMN_05790 0.32 +1.1
1,073,932 + rhsA NIAGMN_05790 0.32 -0.1
1,073,932 + rhsA NIAGMN_05790 0.32 +0.1
1,073,933 - rhsA NIAGMN_05790 0.32 +2.6
1,074,218 - rhsA NIAGMN_05790 0.53 -0.5
1,074,296 - rhsA NIAGMN_05790 0.59 +0.4
1,074,296 - rhsA NIAGMN_05790 0.59 -0.6
1,074,296 - rhsA NIAGMN_05790 0.59 -0.2
1,074,296 - rhsA NIAGMN_05790 0.59 -0.2

Or see this region's nucleotide sequence