Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybdO and ybdN are separated by 146 nucleotides ybdN and ybdM overlap by 28 nucleotides ybdM and ybdL are separated by 0 nucleotides
NIAGMN_05575: ybdO - Uncharacterized HTH-type transcriptional regulator YbdO, at 1,021,953 to 1,022,855
ybdO
NIAGMN_05580: ybdN - Uncharacterized protein YbdN, at 1,023,002 to 1,024,222
ybdN
NIAGMN_05585: ybdM - Uncharacterized protein YbdM, at 1,024,195 to 1,024,824
ybdM
NIAGMN_05590: ybdL - methionine-oxo-acid transaminase, at 1,024,825 to 1,025,985
ybdL
Position (kb) 1023
1024
1025 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 1022.289 kb on - strand, within ybdO at 1022.292 kb on - strand, within ybdO at 1022.292 kb on - strand, within ybdO at 1023.008 kb on - strand at 1023.224 kb on + strand, within ybdN at 1023.224 kb on + strand, within ybdN at 1023.224 kb on + strand, within ybdN at 1023.248 kb on + strand, within ybdN at 1023.441 kb on + strand, within ybdN at 1023.515 kb on + strand, within ybdN at 1023.568 kb on + strand, within ybdN at 1023.602 kb on - strand, within ybdN at 1023.614 kb on + strand, within ybdN at 1023.689 kb on + strand, within ybdN at 1023.689 kb on + strand, within ybdN at 1023.691 kb on + strand, within ybdN at 1023.697 kb on - strand, within ybdN at 1023.701 kb on + strand, within ybdN at 1023.771 kb on + strand, within ybdN at 1023.779 kb on + strand, within ybdN at 1023.812 kb on - strand, within ybdN at 1023.875 kb on + strand, within ybdN at 1023.923 kb on + strand, within ybdN at 1023.923 kb on + strand, within ybdN at 1023.930 kb on + strand, within ybdN at 1023.930 kb on + strand, within ybdN at 1023.992 kb on + strand, within ybdN at 1023.992 kb on + strand, within ybdN at 1024.063 kb on + strand, within ybdN at 1024.063 kb on + strand, within ybdN at 1024.095 kb on + strand, within ybdN at 1024.154 kb on + strand at 1024.163 kb on + strand at 1024.164 kb on - strand at 1024.206 kb on + strand at 1024.206 kb on + strand at 1024.368 kb on + strand, within ybdM at 1024.369 kb on - strand, within ybdM at 1024.382 kb on - strand, within ybdM at 1024.382 kb on - strand, within ybdM at 1024.556 kb on + strand, within ybdM at 1024.564 kb on + strand, within ybdM at 1024.590 kb on + strand, within ybdM at 1024.617 kb on + strand, within ybdM at 1024.626 kb on + strand, within ybdM at 1024.764 kb on + strand at 1024.823 kb on - strand at 1024.823 kb on - strand at 1024.823 kb on - strand at 1024.826 kb on + strand at 1024.827 kb on - strand at 1024.827 kb on - strand at 1024.900 kb on - strand at 1025.028 kb on - strand, within ybdL at 1025.028 kb on - strand, within ybdL at 1025.102 kb on + strand, within ybdL at 1025.123 kb on + strand, within ybdL at 1025.143 kb on + strand, within ybdL at 1025.143 kb on + strand, within ybdL at 1025.143 kb on + strand, within ybdL at 1025.144 kb on - strand, within ybdL at 1025.144 kb on - strand, within ybdL at 1025.144 kb on - strand, within ybdL at 1025.144 kb on - strand, within ybdL at 1025.144 kb on - strand, within ybdL at 1025.195 kb on + strand, within ybdL at 1025.196 kb on - strand, within ybdL
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 1,022,289 - ybdO NIAGMN_05575 0.37 +1.2 1,022,292 - ybdO NIAGMN_05575 0.38 -1.4 1,022,292 - ybdO NIAGMN_05575 0.38 -0.0 1,023,008 - +1.8 1,023,224 + ybdN NIAGMN_05580 0.18 +0.9 1,023,224 + ybdN NIAGMN_05580 0.18 -1.8 1,023,224 + ybdN NIAGMN_05580 0.18 -2.5 1,023,248 + ybdN NIAGMN_05580 0.20 -1.2 1,023,441 + ybdN NIAGMN_05580 0.36 -0.1 1,023,515 + ybdN NIAGMN_05580 0.42 +0.8 1,023,568 + ybdN NIAGMN_05580 0.46 -0.4 1,023,602 - ybdN NIAGMN_05580 0.49 -0.9 1,023,614 + ybdN NIAGMN_05580 0.50 +2.9 1,023,689 + ybdN NIAGMN_05580 0.56 -1.0 1,023,689 + ybdN NIAGMN_05580 0.56 +1.3 1,023,691 + ybdN NIAGMN_05580 0.56 +2.6 1,023,697 - ybdN NIAGMN_05580 0.57 +1.4 1,023,701 + ybdN NIAGMN_05580 0.57 -0.2 1,023,771 + ybdN NIAGMN_05580 0.63 -0.2 1,023,779 + ybdN NIAGMN_05580 0.64 -0.4 1,023,812 - ybdN NIAGMN_05580 0.66 -2.6 1,023,875 + ybdN NIAGMN_05580 0.71 -0.6 1,023,923 + ybdN NIAGMN_05580 0.75 -0.7 1,023,923 + ybdN NIAGMN_05580 0.75 +0.5 1,023,930 + ybdN NIAGMN_05580 0.76 -2.2 1,023,930 + ybdN NIAGMN_05580 0.76 +0.1 1,023,992 + ybdN NIAGMN_05580 0.81 -0.1 1,023,992 + ybdN NIAGMN_05580 0.81 -3.7 1,024,063 + ybdN NIAGMN_05580 0.87 +3.0 1,024,063 + ybdN NIAGMN_05580 0.87 -0.1 1,024,095 + ybdN NIAGMN_05580 0.90 +1.7 1,024,154 + +0.1 1,024,163 + -0.0 1,024,164 - -2.0 1,024,206 + +2.9 1,024,206 + +2.0 1,024,368 + ybdM NIAGMN_05585 0.27 +1.1 1,024,369 - ybdM NIAGMN_05585 0.28 +1.1 1,024,382 - ybdM NIAGMN_05585 0.30 -0.8 1,024,382 - ybdM NIAGMN_05585 0.30 +2.7 1,024,556 + ybdM NIAGMN_05585 0.57 +0.8 1,024,564 + ybdM NIAGMN_05585 0.59 -0.4 1,024,590 + ybdM NIAGMN_05585 0.63 +1.5 1,024,617 + ybdM NIAGMN_05585 0.67 +0.9 1,024,626 + ybdM NIAGMN_05585 0.68 +0.5 1,024,764 + -1.4 1,024,823 - +0.8 1,024,823 - +0.6 1,024,823 - -0.1 1,024,826 + +0.6 1,024,827 - +0.6 1,024,827 - -2.9 1,024,900 - -3.0 1,025,028 - ybdL NIAGMN_05590 0.17 +0.5 1,025,028 - ybdL NIAGMN_05590 0.17 -1.2 1,025,102 + ybdL NIAGMN_05590 0.24 +1.6 1,025,123 + ybdL NIAGMN_05590 0.26 +0.3 1,025,143 + ybdL NIAGMN_05590 0.27 +1.0 1,025,143 + ybdL NIAGMN_05590 0.27 +4.0 1,025,143 + ybdL NIAGMN_05590 0.27 +0.7 1,025,144 - ybdL NIAGMN_05590 0.27 -0.2 1,025,144 - ybdL NIAGMN_05590 0.27 +0.2 1,025,144 - ybdL NIAGMN_05590 0.27 +0.4 1,025,144 - ybdL NIAGMN_05590 0.27 +0.6 1,025,144 - ybdL NIAGMN_05590 0.27 -1.0 1,025,195 + ybdL NIAGMN_05590 0.32 +1.4 1,025,196 - ybdL NIAGMN_05590 0.32 -0.4
Or see this region's nucleotide sequence