Strain Fitness in Escherichia coli ECRC102 around NIAGMN_05295

Experiment: L-Arabinose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntybeZ and ybeY overlap by 4 nucleotidesybeY and corC are separated by 89 nucleotidescorC and lnt are separated by 24 nucleotides NIAGMN_05285: ybeZ - PhoH-like protein, at 967,462 to 968,541 ybeZ NIAGMN_05290: ybeY - rRNA maturation RNase YbeY, at 968,538 to 969,005 ybeY NIAGMN_05295: corC - CNNM family magnesium/cobalt transport protein CorC, at 969,095 to 969,973 corC NIAGMN_05300: lnt - apolipoprotein N-acyltransferase, at 969,998 to 971,536 lnt Position (kb) 969 970Strain fitness (log2 ratio) -2 -1 0 1 2at 968.182 kb on + strand, within ybeZat 968.182 kb on + strand, within ybeZat 968.182 kb on + strand, within ybeZat 968.184 kb on + strand, within ybeZat 968.196 kb on + strand, within ybeZat 968.214 kb on + strand, within ybeZat 968.334 kb on + strand, within ybeZat 968.334 kb on + strand, within ybeZat 968.337 kb on + strand, within ybeZat 968.337 kb on + strand, within ybeZat 968.340 kb on + strand, within ybeZat 968.351 kb on + strand, within ybeZat 968.458 kb on + strandat 968.985 kb on + strandat 969.003 kb on + strandat 969.049 kb on + strandat 969.071 kb on + strandat 969.071 kb on + strandat 969.071 kb on + strandat 969.118 kb on + strandat 969.241 kb on + strand, within corCat 969.538 kb on + strand, within corCat 969.680 kb on + strand, within corCat 969.724 kb on + strand, within corCat 969.913 kb on + strandat 969.913 kb on + strandat 969.971 kb on + strandat 969.971 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
remove
968,182 + ybeZ NIAGMN_05285 0.67 +2.5
968,182 + ybeZ NIAGMN_05285 0.67 -0.5
968,182 + ybeZ NIAGMN_05285 0.67 +0.0
968,184 + ybeZ NIAGMN_05285 0.67 -2.2
968,196 + ybeZ NIAGMN_05285 0.68 +0.7
968,214 + ybeZ NIAGMN_05285 0.70 -0.2
968,334 + ybeZ NIAGMN_05285 0.81 -1.9
968,334 + ybeZ NIAGMN_05285 0.81 -0.6
968,337 + ybeZ NIAGMN_05285 0.81 -0.6
968,337 + ybeZ NIAGMN_05285 0.81 +2.3
968,340 + ybeZ NIAGMN_05285 0.81 +0.1
968,351 + ybeZ NIAGMN_05285 0.82 +1.4
968,458 + +0.1
968,985 + -0.2
969,003 + +0.0
969,049 + +0.1
969,071 + -0.2
969,071 + -0.2
969,071 + -0.0
969,118 + -0.0
969,241 + corC NIAGMN_05295 0.17 +1.3
969,538 + corC NIAGMN_05295 0.50 +1.6
969,680 + corC NIAGMN_05295 0.67 +1.1
969,724 + corC NIAGMN_05295 0.72 +0.9
969,913 + -1.9
969,913 + -0.4
969,971 + -0.6
969,971 + -2.2

Or see this region's nucleotide sequence