Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NIAGMN_05015 and NIAGMN_05020 are separated by 58 nucleotides NIAGMN_05020 and NIAGMN_05025 are separated by 138 nucleotides NIAGMN_05025 and fimC are separated by 14 nucleotides
NIAGMN_05015: NIAGMN_05015 - Fimbrial protein, at 911,597 to 912,163
_05015
NIAGMN_05020: NIAGMN_05020 - Fimbrial biogenesis outer membrane usher protein, at 912,222 to 914,384
_05020
NIAGMN_05025: NIAGMN_05025 - Outer membrane protein, at 914,523 to 914,672
_05025
NIAGMN_05030: fimC - molecular chaperone, at 914,687 to 915,418
fimC
Position (kb) 912
913
914
915 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 911.228 kb on + strand at 911.281 kb on - strand at 911.343 kb on + strand at 911.544 kb on + strand at 911.769 kb on + strand, within NIAGMN_05015 at 912.007 kb on + strand, within NIAGMN_05015 at 912.212 kb on + strand at 912.393 kb on - strand at 912.608 kb on + strand, within NIAGMN_05020 at 912.721 kb on - strand, within NIAGMN_05020 at 912.874 kb on - strand, within NIAGMN_05020 at 912.898 kb on + strand, within NIAGMN_05020 at 912.899 kb on - strand, within NIAGMN_05020 at 912.899 kb on - strand, within NIAGMN_05020 at 912.899 kb on - strand, within NIAGMN_05020 at 912.899 kb on - strand, within NIAGMN_05020 at 912.961 kb on - strand, within NIAGMN_05020 at 913.089 kb on + strand, within NIAGMN_05020 at 913.118 kb on + strand, within NIAGMN_05020 at 913.119 kb on - strand, within NIAGMN_05020 at 913.151 kb on + strand, within NIAGMN_05020 at 913.151 kb on + strand, within NIAGMN_05020 at 913.251 kb on + strand, within NIAGMN_05020 at 913.316 kb on + strand, within NIAGMN_05020 at 913.357 kb on + strand, within NIAGMN_05020 at 913.357 kb on + strand, within NIAGMN_05020 at 913.358 kb on - strand, within NIAGMN_05020 at 913.358 kb on - strand, within NIAGMN_05020 at 913.358 kb on - strand, within NIAGMN_05020 at 913.360 kb on - strand, within NIAGMN_05020 at 913.390 kb on - strand, within NIAGMN_05020 at 913.422 kb on - strand, within NIAGMN_05020 at 913.514 kb on + strand, within NIAGMN_05020 at 913.519 kb on - strand, within NIAGMN_05020 at 913.567 kb on - strand, within NIAGMN_05020 at 913.597 kb on - strand, within NIAGMN_05020 at 913.606 kb on - strand, within NIAGMN_05020 at 913.621 kb on - strand, within NIAGMN_05020 at 913.621 kb on - strand, within NIAGMN_05020 at 913.621 kb on - strand, within NIAGMN_05020 at 913.683 kb on - strand, within NIAGMN_05020 at 913.697 kb on + strand, within NIAGMN_05020 at 913.934 kb on + strand, within NIAGMN_05020 at 913.935 kb on - strand, within NIAGMN_05020 at 913.937 kb on + strand, within NIAGMN_05020 at 914.005 kb on + strand, within NIAGMN_05020 at 914.095 kb on - strand, within NIAGMN_05020 at 914.095 kb on - strand, within NIAGMN_05020 at 914.274 kb on - strand at 914.284 kb on + strand at 914.301 kb on + strand at 914.301 kb on + strand at 914.779 kb on + strand, within fimC at 914.783 kb on - strand, within fimC at 915.003 kb on - strand, within fimC at 915.005 kb on + strand, within fimC at 915.006 kb on - strand, within fimC at 915.085 kb on + strand, within fimC at 915.086 kb on - strand, within fimC at 915.086 kb on - strand, within fimC at 915.090 kb on + strand, within fimC at 915.147 kb on + strand, within fimC at 915.148 kb on - strand, within fimC at 915.167 kb on - strand, within fimC at 915.201 kb on - strand, within fimC at 915.201 kb on - strand, within fimC at 915.201 kb on - strand, within fimC at 915.201 kb on - strand, within fimC at 915.201 kb on - strand, within fimC at 915.253 kb on + strand, within fimC at 915.254 kb on - strand, within fimC at 915.306 kb on - strand, within fimC at 915.332 kb on + strand, within fimC
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 911,228 + +1.1 911,281 - -1.3 911,343 + +3.0 911,544 + +1.0 911,769 + NIAGMN_05015 0.30 -1.7 912,007 + NIAGMN_05015 0.72 +1.0 912,212 + -1.0 912,393 - +2.2 912,608 + NIAGMN_05020 0.18 +1.0 912,721 - NIAGMN_05020 0.23 -0.3 912,874 - NIAGMN_05020 0.30 -1.4 912,898 + NIAGMN_05020 0.31 -1.7 912,899 - NIAGMN_05020 0.31 -1.4 912,899 - NIAGMN_05020 0.31 -3.6 912,899 - NIAGMN_05020 0.31 -1.0 912,899 - NIAGMN_05020 0.31 +0.2 912,961 - NIAGMN_05020 0.34 +0.8 913,089 + NIAGMN_05020 0.40 +0.3 913,118 + NIAGMN_05020 0.41 +2.4 913,119 - NIAGMN_05020 0.41 +2.3 913,151 + NIAGMN_05020 0.43 +1.1 913,151 + NIAGMN_05020 0.43 -0.2 913,251 + NIAGMN_05020 0.48 +1.7 913,316 + NIAGMN_05020 0.51 -1.5 913,357 + NIAGMN_05020 0.52 +0.5 913,357 + NIAGMN_05020 0.52 +0.6 913,358 - NIAGMN_05020 0.53 -1.3 913,358 - NIAGMN_05020 0.53 +1.4 913,358 - NIAGMN_05020 0.53 +1.0 913,360 - NIAGMN_05020 0.53 -3.4 913,390 - NIAGMN_05020 0.54 -0.2 913,422 - NIAGMN_05020 0.55 -1.0 913,514 + NIAGMN_05020 0.60 +2.5 913,519 - NIAGMN_05020 0.60 +3.4 913,567 - NIAGMN_05020 0.62 -1.3 913,597 - NIAGMN_05020 0.64 -1.1 913,606 - NIAGMN_05020 0.64 +0.5 913,621 - NIAGMN_05020 0.65 +0.4 913,621 - NIAGMN_05020 0.65 +1.0 913,621 - NIAGMN_05020 0.65 -0.8 913,683 - NIAGMN_05020 0.68 +0.9 913,697 + NIAGMN_05020 0.68 -1.7 913,934 + NIAGMN_05020 0.79 +0.4 913,935 - NIAGMN_05020 0.79 -1.3 913,937 + NIAGMN_05020 0.79 +2.8 914,005 + NIAGMN_05020 0.82 -0.7 914,095 - NIAGMN_05020 0.87 +2.6 914,095 - NIAGMN_05020 0.87 -1.2 914,274 - -0.1 914,284 + -2.2 914,301 + -0.7 914,301 + +2.7 914,779 + fimC NIAGMN_05030 0.13 +0.5 914,783 - fimC NIAGMN_05030 0.13 +1.4 915,003 - fimC NIAGMN_05030 0.43 -3.0 915,005 + fimC NIAGMN_05030 0.43 +0.9 915,006 - fimC NIAGMN_05030 0.44 -0.1 915,085 + fimC NIAGMN_05030 0.54 +2.8 915,086 - fimC NIAGMN_05030 0.55 -0.7 915,086 - fimC NIAGMN_05030 0.55 +1.0 915,090 + fimC NIAGMN_05030 0.55 -0.9 915,147 + fimC NIAGMN_05030 0.63 +1.6 915,148 - fimC NIAGMN_05030 0.63 -2.4 915,167 - fimC NIAGMN_05030 0.66 -1.7 915,201 - fimC NIAGMN_05030 0.70 +1.0 915,201 - fimC NIAGMN_05030 0.70 +0.3 915,201 - fimC NIAGMN_05030 0.70 +0.5 915,201 - fimC NIAGMN_05030 0.70 +0.1 915,201 - fimC NIAGMN_05030 0.70 +2.4 915,253 + fimC NIAGMN_05030 0.77 +1.7 915,254 - fimC NIAGMN_05030 0.77 -0.4 915,306 - fimC NIAGMN_05030 0.85 +3.2 915,332 + fimC NIAGMN_05030 0.88 -0.6
Or see this region's nucleotide sequence