Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybhD and pgl are separated by 40 nucleotides pgl and ybhA are separated by 154 nucleotides ybhA and modC are separated by 0 nucleotides
NIAGMN_04720: ybhD - Uncharacterized HTH-type transcriptional regulator YbhD, at 856,592 to 857,545
ybhD
NIAGMN_04725: pgl - 6-phosphogluconolactonase, at 857,586 to 858,581
pgl
NIAGMN_04730: ybhA - bifunctional pyridoxal phosphate/fructose-1,6-bisphosphate phosphatase, at 858,736 to 859,554
ybhA
NIAGMN_04735: modC - molybdenum ABC transporter ATP-binding protein ModC, at 859,555 to 860,613
modC
Position (kb) 857
858
859 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 856.729 kb on + strand, within ybhD at 856.859 kb on + strand, within ybhD at 857.178 kb on + strand, within ybhD at 857.208 kb on + strand, within ybhD at 857.252 kb on + strand, within ybhD at 857.280 kb on + strand, within ybhD at 857.289 kb on + strand, within ybhD at 857.290 kb on - strand, within ybhD at 857.357 kb on - strand, within ybhD at 857.383 kb on + strand, within ybhD at 857.385 kb on + strand, within ybhD at 857.538 kb on + strand at 857.538 kb on + strand at 857.538 kb on + strand at 857.633 kb on - strand at 857.652 kb on + strand at 857.719 kb on + strand, within pgl at 857.723 kb on + strand, within pgl at 857.739 kb on - strand, within pgl at 857.823 kb on - strand, within pgl at 857.853 kb on + strand, within pgl at 857.854 kb on - strand, within pgl at 857.854 kb on - strand, within pgl at 857.854 kb on - strand, within pgl at 857.854 kb on - strand, within pgl at 857.873 kb on + strand, within pgl at 857.883 kb on - strand, within pgl at 857.994 kb on + strand, within pgl at 857.995 kb on - strand, within pgl at 858.010 kb on + strand, within pgl at 858.016 kb on + strand, within pgl at 858.017 kb on - strand, within pgl at 858.017 kb on - strand, within pgl at 858.037 kb on - strand, within pgl at 858.041 kb on + strand, within pgl at 858.164 kb on + strand, within pgl at 858.259 kb on - strand, within pgl at 858.280 kb on + strand, within pgl at 858.281 kb on - strand, within pgl at 858.281 kb on - strand, within pgl at 858.281 kb on - strand, within pgl at 858.288 kb on + strand, within pgl at 858.324 kb on - strand, within pgl at 858.324 kb on - strand, within pgl at 858.390 kb on - strand, within pgl at 858.430 kb on + strand, within pgl at 858.430 kb on + strand, within pgl at 858.431 kb on - strand, within pgl at 858.437 kb on - strand, within pgl at 858.690 kb on - strand at 858.690 kb on - strand at 858.690 kb on - strand at 858.776 kb on + strand at 858.777 kb on - strand at 858.801 kb on - strand at 858.852 kb on - strand, within ybhA at 858.896 kb on - strand, within ybhA at 858.924 kb on + strand, within ybhA at 859.000 kb on - strand, within ybhA at 859.000 kb on - strand, within ybhA at 859.054 kb on + strand, within ybhA at 859.054 kb on + strand, within ybhA at 859.054 kb on + strand, within ybhA at 859.054 kb on + strand, within ybhA at 859.054 kb on + strand, within ybhA at 859.054 kb on + strand, within ybhA at 859.055 kb on - strand, within ybhA at 859.055 kb on - strand, within ybhA at 859.055 kb on - strand, within ybhA at 859.075 kb on + strand, within ybhA at 859.192 kb on - strand, within ybhA at 859.199 kb on + strand, within ybhA at 859.506 kb on + strand at 859.537 kb on + strand at 859.538 kb on - strand at 859.553 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 856,729 + ybhD NIAGMN_04720 0.14 +2.4 856,859 + ybhD NIAGMN_04720 0.28 +0.7 857,178 + ybhD NIAGMN_04720 0.61 +0.2 857,208 + ybhD NIAGMN_04720 0.65 -1.2 857,252 + ybhD NIAGMN_04720 0.69 -2.8 857,280 + ybhD NIAGMN_04720 0.72 -0.2 857,289 + ybhD NIAGMN_04720 0.73 -3.7 857,290 - ybhD NIAGMN_04720 0.73 -0.6 857,357 - ybhD NIAGMN_04720 0.80 -1.3 857,383 + ybhD NIAGMN_04720 0.83 +1.5 857,385 + ybhD NIAGMN_04720 0.83 +0.2 857,538 + -2.0 857,538 + +0.9 857,538 + +1.3 857,633 - -3.4 857,652 + -0.9 857,719 + pgl NIAGMN_04725 0.13 -1.3 857,723 + pgl NIAGMN_04725 0.14 -1.9 857,739 - pgl NIAGMN_04725 0.15 -2.9 857,823 - pgl NIAGMN_04725 0.24 -1.4 857,853 + pgl NIAGMN_04725 0.27 +0.1 857,854 - pgl NIAGMN_04725 0.27 -2.4 857,854 - pgl NIAGMN_04725 0.27 +0.8 857,854 - pgl NIAGMN_04725 0.27 -1.2 857,854 - pgl NIAGMN_04725 0.27 -0.4 857,873 + pgl NIAGMN_04725 0.29 +0.6 857,883 - pgl NIAGMN_04725 0.30 -2.6 857,994 + pgl NIAGMN_04725 0.41 -0.4 857,995 - pgl NIAGMN_04725 0.41 -1.8 858,010 + pgl NIAGMN_04725 0.43 -2.2 858,016 + pgl NIAGMN_04725 0.43 -0.6 858,017 - pgl NIAGMN_04725 0.43 -1.5 858,017 - pgl NIAGMN_04725 0.43 -1.3 858,037 - pgl NIAGMN_04725 0.45 -0.9 858,041 + pgl NIAGMN_04725 0.46 -1.6 858,164 + pgl NIAGMN_04725 0.58 -2.8 858,259 - pgl NIAGMN_04725 0.68 +2.2 858,280 + pgl NIAGMN_04725 0.70 -1.8 858,281 - pgl NIAGMN_04725 0.70 +2.4 858,281 - pgl NIAGMN_04725 0.70 -2.9 858,281 - pgl NIAGMN_04725 0.70 +0.7 858,288 + pgl NIAGMN_04725 0.70 -0.4 858,324 - pgl NIAGMN_04725 0.74 -1.1 858,324 - pgl NIAGMN_04725 0.74 +0.8 858,390 - pgl NIAGMN_04725 0.81 +1.5 858,430 + pgl NIAGMN_04725 0.85 -1.0 858,430 + pgl NIAGMN_04725 0.85 +1.9 858,431 - pgl NIAGMN_04725 0.85 -1.8 858,437 - pgl NIAGMN_04725 0.85 -1.2 858,690 - -3.9 858,690 - -2.0 858,690 - -1.3 858,776 + +0.3 858,777 - -0.6 858,801 - -1.5 858,852 - ybhA NIAGMN_04730 0.14 -2.8 858,896 - ybhA NIAGMN_04730 0.20 -0.6 858,924 + ybhA NIAGMN_04730 0.23 +0.8 859,000 - ybhA NIAGMN_04730 0.32 +0.7 859,000 - ybhA NIAGMN_04730 0.32 +0.1 859,054 + ybhA NIAGMN_04730 0.39 -2.6 859,054 + ybhA NIAGMN_04730 0.39 -1.3 859,054 + ybhA NIAGMN_04730 0.39 +1.1 859,054 + ybhA NIAGMN_04730 0.39 +1.8 859,054 + ybhA NIAGMN_04730 0.39 -2.2 859,054 + ybhA NIAGMN_04730 0.39 -1.4 859,055 - ybhA NIAGMN_04730 0.39 -0.0 859,055 - ybhA NIAGMN_04730 0.39 -1.5 859,055 - ybhA NIAGMN_04730 0.39 +0.7 859,075 + ybhA NIAGMN_04730 0.41 -0.1 859,192 - ybhA NIAGMN_04730 0.56 +0.4 859,199 + ybhA NIAGMN_04730 0.57 -0.4 859,506 + +1.3 859,537 + +0.4 859,538 - +0.6 859,553 - -1.7
Or see this region's nucleotide sequence