Strain Fitness in Escherichia coli ECRC102 around NIAGMN_04365

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntybhR and ybhQ overlap by 39 nucleotidesybhQ and ybhP are separated by 132 nucleotidesybhP and clsB overlap by 4 nucleotides NIAGMN_04360: ybhR - putative multidrug ABC transporter permease YbhR, at 792,565 to 793,671 ybhR NIAGMN_04365: ybhQ - Inner membrane protein YbhQ, at 793,633 to 794,043 ybhQ NIAGMN_04370: ybhP - Uncharacterized protein YbhP, at 794,176 to 794,937 ybhP NIAGMN_04375: clsB - cardiolipin synthase ClsB, at 794,934 to 796,175 clsB Position (kb) 793 794 795Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 792.722 kb on - strand, within ybhRat 792.854 kb on + strand, within ybhRat 792.968 kb on - strand, within ybhRat 793.333 kb on + strand, within ybhRat 793.333 kb on + strand, within ybhRat 793.338 kb on + strand, within ybhRat 793.339 kb on - strand, within ybhRat 793.352 kb on - strand, within ybhRat 793.518 kb on + strand, within ybhRat 793.593 kb on + strandat 793.594 kb on - strandat 793.660 kb on - strandat 793.901 kb on + strand, within ybhQat 793.902 kb on - strand, within ybhQat 793.902 kb on - strand, within ybhQat 793.942 kb on - strand, within ybhQat 793.990 kb on - strand, within ybhQat 793.990 kb on - strand, within ybhQat 793.990 kb on - strand, within ybhQat 794.070 kb on + strandat 794.071 kb on - strandat 794.075 kb on - strandat 794.075 kb on - strandat 794.140 kb on + strandat 794.140 kb on + strandat 794.141 kb on - strandat 794.153 kb on + strandat 794.153 kb on + strandat 794.153 kb on + strandat 794.154 kb on - strandat 794.403 kb on + strand, within ybhPat 794.403 kb on + strand, within ybhPat 794.404 kb on - strand, within ybhPat 794.404 kb on - strand, within ybhPat 794.494 kb on + strand, within ybhPat 794.494 kb on + strand, within ybhPat 794.597 kb on + strand, within ybhPat 794.597 kb on + strand, within ybhPat 794.597 kb on + strand, within ybhPat 794.597 kb on + strand, within ybhPat 794.597 kb on + strand, within ybhPat 794.598 kb on - strand, within ybhPat 794.598 kb on - strand, within ybhPat 794.598 kb on - strand, within ybhPat 794.836 kb on + strand, within ybhPat 794.837 kb on - strand, within ybhPat 794.916 kb on - strandat 794.942 kb on + strandat 794.943 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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792,722 - ybhR NIAGMN_04360 0.14 +0.8
792,854 + ybhR NIAGMN_04360 0.26 -0.6
792,968 - ybhR NIAGMN_04360 0.36 -0.7
793,333 + ybhR NIAGMN_04360 0.69 +2.5
793,333 + ybhR NIAGMN_04360 0.69 -0.8
793,338 + ybhR NIAGMN_04360 0.70 -1.6
793,339 - ybhR NIAGMN_04360 0.70 -0.2
793,352 - ybhR NIAGMN_04360 0.71 +0.1
793,518 + ybhR NIAGMN_04360 0.86 -3.1
793,593 + +0.0
793,594 - +1.0
793,660 - +0.0
793,901 + ybhQ NIAGMN_04365 0.65 -2.6
793,902 - ybhQ NIAGMN_04365 0.65 +0.8
793,902 - ybhQ NIAGMN_04365 0.65 -1.7
793,942 - ybhQ NIAGMN_04365 0.75 -0.2
793,990 - ybhQ NIAGMN_04365 0.87 +1.5
793,990 - ybhQ NIAGMN_04365 0.87 +1.4
793,990 - ybhQ NIAGMN_04365 0.87 +1.5
794,070 + -0.2
794,071 - -0.2
794,075 - -0.7
794,075 - -0.3
794,140 + +0.9
794,140 + -2.3
794,141 - +2.7
794,153 + -0.6
794,153 + -2.6
794,153 + +0.9
794,154 - +3.4
794,403 + ybhP NIAGMN_04370 0.30 +1.2
794,403 + ybhP NIAGMN_04370 0.30 -1.6
794,404 - ybhP NIAGMN_04370 0.30 +0.4
794,404 - ybhP NIAGMN_04370 0.30 -0.0
794,494 + ybhP NIAGMN_04370 0.42 +0.9
794,494 + ybhP NIAGMN_04370 0.42 +0.0
794,597 + ybhP NIAGMN_04370 0.55 +1.2
794,597 + ybhP NIAGMN_04370 0.55 +0.0
794,597 + ybhP NIAGMN_04370 0.55 -1.5
794,597 + ybhP NIAGMN_04370 0.55 +0.9
794,597 + ybhP NIAGMN_04370 0.55 -1.0
794,598 - ybhP NIAGMN_04370 0.55 -1.7
794,598 - ybhP NIAGMN_04370 0.55 -0.1
794,598 - ybhP NIAGMN_04370 0.55 -1.6
794,836 + ybhP NIAGMN_04370 0.87 +0.4
794,837 - ybhP NIAGMN_04370 0.87 -0.1
794,916 - +0.4
794,942 + -0.4
794,943 - -1.1

Or see this region's nucleotide sequence