Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pdeI and gsiD are separated by 177 nucleotides gsiD and gsiC are separated by 2 nucleotides gsiC and gsiB are separated by 17 nucleotides
NIAGMN_04125: pdeI - putative cyclic di-GMP phosphodiesterase PdeI, at 741,379 to 743,727
pdeI
NIAGMN_04130: gsiD - glutathione ABC transporter permease GsiD, at 743,905 to 744,816
gsiD
NIAGMN_04135: gsiC - glutathione ABC transporter permease GsiC, at 744,819 to 745,739
gsiC
NIAGMN_04140: gsiB - glutathione ABC transporter substrate-binding protein GsiB, at 745,757 to 747,295
gsiB
Position (kb) 743
744
745 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 743.012 kb on + strand, within pdeI at 743.425 kb on + strand, within pdeI at 744.153 kb on + strand, within gsiD at 744.312 kb on + strand, within gsiD at 744.432 kb on - strand, within gsiD at 744.432 kb on - strand, within gsiD at 744.671 kb on - strand, within gsiD at 744.749 kb on - strand at 744.820 kb on + strand at 744.821 kb on - strand at 744.821 kb on - strand at 744.821 kb on - strand at 744.854 kb on - strand at 744.871 kb on - strand at 744.885 kb on - strand at 745.127 kb on + strand, within gsiC at 745.128 kb on - strand, within gsiC at 745.128 kb on - strand, within gsiC at 745.128 kb on - strand, within gsiC at 745.129 kb on + strand, within gsiC at 745.129 kb on + strand, within gsiC at 745.140 kb on + strand, within gsiC at 745.141 kb on - strand, within gsiC at 745.215 kb on + strand, within gsiC at 745.223 kb on - strand, within gsiC at 745.279 kb on - strand, within gsiC at 745.279 kb on - strand, within gsiC at 745.407 kb on + strand, within gsiC at 745.538 kb on - strand, within gsiC at 745.538 kb on - strand, within gsiC at 745.556 kb on - strand, within gsiC at 745.596 kb on + strand, within gsiC at 745.597 kb on - strand, within gsiC at 745.655 kb on + strand at 745.656 kb on - strand at 745.656 kb on - strand at 745.656 kb on - strand at 745.714 kb on - strand at 745.729 kb on + strand at 745.730 kb on - strand at 745.734 kb on - strand at 745.734 kb on - strand at 745.759 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 743,012 + pdeI NIAGMN_04125 0.70 +1.0 743,425 + pdeI NIAGMN_04125 0.87 -0.8 744,153 + gsiD NIAGMN_04130 0.27 -2.1 744,312 + gsiD NIAGMN_04130 0.45 -2.3 744,432 - gsiD NIAGMN_04130 0.58 -1.0 744,432 - gsiD NIAGMN_04130 0.58 +0.5 744,671 - gsiD NIAGMN_04130 0.84 -0.1 744,749 - -0.2 744,820 + +0.5 744,821 - -1.1 744,821 - +0.5 744,821 - +1.5 744,854 - -2.8 744,871 - +0.3 744,885 - +0.6 745,127 + gsiC NIAGMN_04135 0.33 +2.2 745,128 - gsiC NIAGMN_04135 0.34 -0.9 745,128 - gsiC NIAGMN_04135 0.34 +1.8 745,128 - gsiC NIAGMN_04135 0.34 +0.9 745,129 + gsiC NIAGMN_04135 0.34 +1.7 745,129 + gsiC NIAGMN_04135 0.34 +3.1 745,140 + gsiC NIAGMN_04135 0.35 +2.5 745,141 - gsiC NIAGMN_04135 0.35 -0.0 745,215 + gsiC NIAGMN_04135 0.43 -1.2 745,223 - gsiC NIAGMN_04135 0.44 -0.8 745,279 - gsiC NIAGMN_04135 0.50 -1.4 745,279 - gsiC NIAGMN_04135 0.50 -0.2 745,407 + gsiC NIAGMN_04135 0.64 -0.6 745,538 - gsiC NIAGMN_04135 0.78 -2.3 745,538 - gsiC NIAGMN_04135 0.78 +0.6 745,556 - gsiC NIAGMN_04135 0.80 -0.2 745,596 + gsiC NIAGMN_04135 0.84 -0.1 745,597 - gsiC NIAGMN_04135 0.84 -2.4 745,655 + -1.6 745,656 - +0.2 745,656 - -1.6 745,656 - +2.4 745,714 - +0.7 745,729 + -0.2 745,730 - +1.7 745,734 - -2.2 745,734 - -1.3 745,759 - +3.2
Or see this region's nucleotide sequence