Strain Fitness in Escherichia coli ECRC102 around NIAGMN_03665

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNIAGMN_03665 and NIAGMN_03670 are separated by 871 nucleotides NIAGMN_03665: NIAGMN_03665 - Membrane protein, at 655,693 to 656,364 _03665 NIAGMN_03670: NIAGMN_03670 - Hok/Gef family protein, at 657,236 to 657,376 _03670 Position (kb) 655 656 657Strain fitness (log2 ratio) -2 -1 0 1 2 3at 654.712 kb on - strandat 654.819 kb on - strandat 655.034 kb on - strandat 655.139 kb on - strandat 655.158 kb on - strandat 655.158 kb on - strandat 655.291 kb on + strandat 655.292 kb on - strandat 655.292 kb on - strandat 655.292 kb on - strandat 655.292 kb on - strandat 655.338 kb on + strandat 655.338 kb on + strandat 655.339 kb on - strandat 655.339 kb on - strandat 655.339 kb on - strandat 655.339 kb on - strandat 655.339 kb on - strandat 655.339 kb on - strandat 655.347 kb on - strandat 655.368 kb on - strandat 655.489 kb on - strandat 655.498 kb on - strandat 655.688 kb on + strandat 656.709 kb on - strandat 656.901 kb on - strandat 656.990 kb on + strandat 656.990 kb on + strandat 656.991 kb on - strandat 656.992 kb on + strandat 657.088 kb on - strandat 657.128 kb on + strandat 657.245 kb on - strandat 657.312 kb on - strand, within NIAGMN_03670at 657.345 kb on - strand, within NIAGMN_03670at 657.345 kb on - strand, within NIAGMN_03670

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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654,712 - +2.8
654,819 - -1.6
655,034 - +0.2
655,139 - +1.2
655,158 - -0.7
655,158 - -0.6
655,291 + -0.5
655,292 - +1.7
655,292 - -0.2
655,292 - +0.5
655,292 - +2.9
655,338 + -0.1
655,338 + -0.2
655,339 - +0.1
655,339 - -1.0
655,339 - +1.3
655,339 - -0.7
655,339 - -0.3
655,339 - -0.5
655,347 - +0.3
655,368 - -2.7
655,489 - +3.0
655,498 - +0.2
655,688 + -2.0
656,709 - -0.5
656,901 - -0.0
656,990 + -0.7
656,990 + +1.9
656,991 - +0.7
656,992 + +1.5
657,088 - -0.4
657,128 + +1.5
657,245 - +0.2
657,312 - NIAGMN_03670 0.54 -1.0
657,345 - NIAGMN_03670 0.77 -0.7
657,345 - NIAGMN_03670 0.77 -2.5

Or see this region's nucleotide sequence