Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NIAGMN_03635 and tnpB are separated by 30 nucleotides tnpB and NIAGMN_03645 overlap by 4 nucleotides NIAGMN_03645 and NIAGMN_03650 are separated by 319 nucleotides
NIAGMN_03635: NIAGMN_03635 - IS66-like element IS682 family transposase, at 650,939 to 652,552
_03635
NIAGMN_03640: tnpB - IS66 family insertion sequence element accessory protein TnpB, at 652,583 to 652,933
tnpB
NIAGMN_03645: NIAGMN_03645 - putative transposase of insertion sequence IS682, at 652,930 to 653,355
_03645
NIAGMN_03650: NIAGMN_03650 - IS66 family transposase, at 653,675 to 654,160
_03650
Position (kb) 652
653 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 651.685 kb on - strand, within NIAGMN_03635 at 651.813 kb on - strand, within NIAGMN_03635 at 651.845 kb on + strand, within NIAGMN_03635 at 651.972 kb on - strand, within NIAGMN_03635 at 652.002 kb on - strand, within NIAGMN_03635 at 652.252 kb on - strand, within NIAGMN_03635 at 652.562 kb on + strand at 652.562 kb on + strand at 652.802 kb on - strand, within tnpB at 652.845 kb on - strand, within tnpB at 652.873 kb on + strand, within tnpB at 652.879 kb on + strand, within tnpB at 653.025 kb on + strand, within NIAGMN_03645 at 653.076 kb on + strand, within NIAGMN_03645 at 653.128 kb on + strand, within NIAGMN_03645 at 653.129 kb on - strand, within NIAGMN_03645 at 653.179 kb on - strand, within NIAGMN_03645 at 653.415 kb on + strand at 653.501 kb on + strand at 653.596 kb on + strand at 653.645 kb on + strand at 653.646 kb on - strand at 653.647 kb on + strand at 653.745 kb on + strand, within NIAGMN_03650 at 653.746 kb on - strand, within NIAGMN_03650 at 653.855 kb on - strand, within NIAGMN_03650 at 653.859 kb on - strand, within NIAGMN_03650 at 653.926 kb on + strand, within NIAGMN_03650
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 651,685 - NIAGMN_03635 0.46 +0.4 651,813 - NIAGMN_03635 0.54 -0.9 651,845 + NIAGMN_03635 0.56 -0.3 651,972 - NIAGMN_03635 0.64 +2.6 652,002 - NIAGMN_03635 0.66 +2.8 652,252 - NIAGMN_03635 0.81 +0.3 652,562 + -0.3 652,562 + -0.4 652,802 - tnpB NIAGMN_03640 0.62 -4.4 652,845 - tnpB NIAGMN_03640 0.75 +2.4 652,873 + tnpB NIAGMN_03640 0.83 -0.9 652,879 + tnpB NIAGMN_03640 0.84 +0.3 653,025 + NIAGMN_03645 0.22 +0.3 653,076 + NIAGMN_03645 0.34 -0.5 653,128 + NIAGMN_03645 0.46 +0.6 653,129 - NIAGMN_03645 0.47 -1.0 653,179 - NIAGMN_03645 0.58 -1.5 653,415 + +2.3 653,501 + -2.3 653,596 + +1.7 653,645 + -1.6 653,646 - -1.6 653,647 + -0.1 653,745 + NIAGMN_03650 0.14 +0.9 653,746 - NIAGMN_03650 0.15 +3.0 653,855 - NIAGMN_03650 0.37 -0.2 653,859 - NIAGMN_03650 0.38 -1.0 653,926 + NIAGMN_03650 0.52 -2.0
Or see this region's nucleotide sequence