Strain Fitness in Escherichia coli ECRC102 around NIAGMN_03350

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNIAGMN_03335 and NIAGMN_03340 overlap by 4 nucleotidesNIAGMN_03340 and NIAGMN_03345 are separated by 46 nucleotidesNIAGMN_03345 and NIAGMN_03350 are separated by 49 nucleotidesNIAGMN_03350 and NIAGMN_03355 overlap by 1 nucleotidesNIAGMN_03355 and yeeS are separated by 62 nucleotidesyeeS and NIAGMN_03365 are separated by 15 nucleotides NIAGMN_03335: NIAGMN_03335 - DUF5983 domain-containing protein, at 599,117 to 599,608 _03335 NIAGMN_03340: NIAGMN_03340 - toxin, at 599,605 to 599,979 _03340 NIAGMN_03345: NIAGMN_03345 - antitoxin, at 600,026 to 600,400 _03345 NIAGMN_03350: NIAGMN_03350 - Phage-related protein, at 600,450 to 600,563 _03350 NIAGMN_03355: NIAGMN_03355 - DUF987 domain-containing protein, at 600,563 to 600,784 _03355 NIAGMN_03360: yeeS - UPF0758 protein YeeS, at 600,847 to 601,323 yeeS NIAGMN_03365: NIAGMN_03365 - restriction endonuclease, at 601,339 to 601,824 _03365 Position (kb) 600 601Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 599.713 kb on + strand, within NIAGMN_03340at 599.953 kb on + strandat 599.953 kb on + strandat 599.982 kb on + strandat 599.982 kb on + strandat 600.223 kb on - strand, within NIAGMN_03345at 600.223 kb on - strand, within NIAGMN_03345at 600.273 kb on + strand, within NIAGMN_03345at 600.426 kb on + strandat 600.427 kb on - strandat 600.437 kb on + strandat 600.649 kb on + strand, within NIAGMN_03355at 600.650 kb on - strand, within NIAGMN_03355at 600.670 kb on + strand, within NIAGMN_03355at 600.671 kb on - strand, within NIAGMN_03355at 600.672 kb on + strand, within NIAGMN_03355at 600.704 kb on - strand, within NIAGMN_03355at 600.812 kb on - strandat 601.455 kb on - strand, within NIAGMN_03365

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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599,713 + NIAGMN_03340 0.29 -2.6
599,953 + +1.4
599,953 + -0.3
599,982 + -0.5
599,982 + -0.6
600,223 - NIAGMN_03345 0.53 +3.3
600,223 - NIAGMN_03345 0.53 -1.5
600,273 + NIAGMN_03345 0.66 -3.1
600,426 + -0.4
600,427 - -1.5
600,437 + +1.4
600,649 + NIAGMN_03355 0.39 -2.7
600,650 - NIAGMN_03355 0.39 +0.0
600,670 + NIAGMN_03355 0.48 +2.6
600,671 - NIAGMN_03355 0.49 +2.8
600,672 + NIAGMN_03355 0.49 -0.4
600,704 - NIAGMN_03355 0.64 +0.6
600,812 - +0.7
601,455 - NIAGMN_03365 0.24 -0.5

Or see this region's nucleotide sequence