Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt aroA and serC are separated by 70 nucleotides serC and ycaP are separated by 198 nucleotides
NIAGMN_03205: aroA - 3-phosphoshikimate 1-carboxyvinyltransferase, at 565,054 to 566,337
aroA
NIAGMN_03210: serC - 3-phosphoserine/phosphohydroxythreonine transaminase, at 566,408 to 567,496
serC
NIAGMN_03215: ycaP - UPF0702 transmembrane protein YcaP, at 567,695 to 568,387
ycaP
Position (kb) 566
567
568 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 565.461 kb on - strand, within aroA at 565.531 kb on - strand, within aroA at 565.537 kb on - strand, within aroA at 565.559 kb on - strand, within aroA at 565.629 kb on - strand, within aroA at 565.633 kb on - strand, within aroA at 565.664 kb on - strand, within aroA at 565.739 kb on + strand, within aroA at 566.093 kb on - strand, within aroA at 566.127 kb on + strand, within aroA at 566.147 kb on + strand, within aroA at 566.147 kb on + strand, within aroA at 566.167 kb on + strand, within aroA at 566.219 kb on - strand at 566.262 kb on + strand at 566.290 kb on - strand at 566.320 kb on + strand at 566.481 kb on + strand at 566.482 kb on - strand at 566.482 kb on - strand at 566.482 kb on - strand at 566.482 kb on - strand at 566.668 kb on - strand, within serC at 566.712 kb on - strand, within serC at 566.758 kb on - strand, within serC at 566.758 kb on - strand, within serC at 566.783 kb on - strand, within serC at 566.925 kb on - strand, within serC at 567.064 kb on - strand, within serC at 567.398 kb on - strand at 567.456 kb on - strand at 567.521 kb on - strand at 567.521 kb on - strand at 567.521 kb on - strand at 567.555 kb on - strand at 567.557 kb on + strand at 567.558 kb on - strand at 567.558 kb on - strand at 567.558 kb on - strand at 567.558 kb on - strand at 567.558 kb on - strand at 567.558 kb on - strand at 567.563 kb on - strand at 567.584 kb on - strand at 567.613 kb on - strand at 567.613 kb on - strand at 567.668 kb on - strand at 567.756 kb on - strand at 567.756 kb on - strand at 567.803 kb on - strand, within ycaP at 567.811 kb on - strand, within ycaP at 567.811 kb on - strand, within ycaP at 567.847 kb on + strand, within ycaP at 567.848 kb on - strand, within ycaP at 567.866 kb on - strand, within ycaP at 567.904 kb on - strand, within ycaP at 567.944 kb on + strand, within ycaP at 567.944 kb on + strand, within ycaP at 567.945 kb on - strand, within ycaP at 568.116 kb on - strand, within ycaP at 568.154 kb on - strand, within ycaP at 568.183 kb on - strand, within ycaP at 568.304 kb on - strand, within ycaP at 568.417 kb on - strand at 568.482 kb on + strand at 568.483 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 565,461 - aroA NIAGMN_03205 0.32 -2.2 565,531 - aroA NIAGMN_03205 0.37 -2.5 565,537 - aroA NIAGMN_03205 0.38 -3.0 565,559 - aroA NIAGMN_03205 0.39 -3.2 565,629 - aroA NIAGMN_03205 0.45 -2.1 565,633 - aroA NIAGMN_03205 0.45 -3.8 565,664 - aroA NIAGMN_03205 0.48 +0.2 565,739 + aroA NIAGMN_03205 0.53 -4.3 566,093 - aroA NIAGMN_03205 0.81 -2.4 566,127 + aroA NIAGMN_03205 0.84 -1.9 566,147 + aroA NIAGMN_03205 0.85 -0.2 566,147 + aroA NIAGMN_03205 0.85 -3.4 566,167 + aroA NIAGMN_03205 0.87 -1.1 566,219 - -0.2 566,262 + -2.6 566,290 - -3.0 566,320 + -2.9 566,481 + +1.6 566,482 - -3.3 566,482 - -0.8 566,482 - -1.4 566,482 - -4.1 566,668 - serC NIAGMN_03210 0.24 -1.6 566,712 - serC NIAGMN_03210 0.28 -0.0 566,758 - serC NIAGMN_03210 0.32 -0.7 566,758 - serC NIAGMN_03210 0.32 -4.5 566,783 - serC NIAGMN_03210 0.34 -4.8 566,925 - serC NIAGMN_03210 0.47 -0.4 567,064 - serC NIAGMN_03210 0.60 -2.6 567,398 - -2.3 567,456 - -1.0 567,521 - -1.5 567,521 - +1.9 567,521 - -3.4 567,555 - +0.6 567,557 + -0.6 567,558 - -1.5 567,558 - -0.4 567,558 - +2.4 567,558 - -0.4 567,558 - -2.0 567,558 - +0.3 567,563 - -0.4 567,584 - +0.6 567,613 - +1.6 567,613 - -0.2 567,668 - +0.4 567,756 - +0.6 567,756 - +0.3 567,803 - ycaP NIAGMN_03215 0.16 -1.7 567,811 - ycaP NIAGMN_03215 0.17 -0.0 567,811 - ycaP NIAGMN_03215 0.17 +0.3 567,847 + ycaP NIAGMN_03215 0.22 -1.1 567,848 - ycaP NIAGMN_03215 0.22 +0.7 567,866 - ycaP NIAGMN_03215 0.25 -1.1 567,904 - ycaP NIAGMN_03215 0.30 +0.4 567,944 + ycaP NIAGMN_03215 0.36 +1.0 567,944 + ycaP NIAGMN_03215 0.36 +1.0 567,945 - ycaP NIAGMN_03215 0.36 -2.0 568,116 - ycaP NIAGMN_03215 0.61 -1.1 568,154 - ycaP NIAGMN_03215 0.66 -0.1 568,183 - ycaP NIAGMN_03215 0.70 -1.6 568,304 - ycaP NIAGMN_03215 0.88 +2.5 568,417 - +0.1 568,482 + +2.9 568,483 - +0.9
Or see this region's nucleotide sequence