Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt aspC and gloC are separated by 50 nucleotides gloC and ycbK are separated by 26 nucleotides ycbK and ldtD are separated by 180 nucleotides
NIAGMN_03105: aspC - aspartate transaminase, at 539,612 to 540,802
aspC
NIAGMN_03110: gloC - hydroxyacylglutathione hydrolase GloC, at 540,853 to 541,500
gloC
NIAGMN_03115: ycbK - Uncharacterized protein YcbK, at 541,527 to 542,075
ycbK
NIAGMN_03120: ldtD - L,D-transpeptidase, at 542,256 to 544,103
ldtD
Position (kb) 540
541
542 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 540.056 kb on + strand, within aspC at 540.316 kb on + strand, within aspC at 540.317 kb on - strand, within aspC at 540.800 kb on + strand at 540.844 kb on - strand at 540.889 kb on - strand at 540.889 kb on - strand at 540.889 kb on - strand at 540.937 kb on - strand, within gloC at 541.045 kb on - strand, within gloC at 541.104 kb on + strand, within gloC at 541.121 kb on - strand, within gloC at 541.121 kb on - strand, within gloC at 541.121 kb on - strand, within gloC at 541.130 kb on - strand, within gloC at 541.216 kb on - strand, within gloC at 541.494 kb on - strand at 541.500 kb on + strand at 541.526 kb on - strand at 541.526 kb on - strand at 541.529 kb on - strand at 541.529 kb on - strand at 541.557 kb on - strand at 541.557 kb on - strand at 541.569 kb on - strand at 541.569 kb on - strand at 541.569 kb on - strand at 541.580 kb on - strand at 541.588 kb on - strand, within ycbK at 541.604 kb on + strand, within ycbK at 541.605 kb on - strand, within ycbK at 541.609 kb on - strand, within ycbK at 541.609 kb on - strand, within ycbK at 541.813 kb on - strand, within ycbK at 541.895 kb on - strand, within ycbK at 542.088 kb on + strand at 542.108 kb on + strand at 542.109 kb on - strand at 542.110 kb on + strand at 542.111 kb on - strand at 542.111 kb on - strand at 542.249 kb on - strand at 542.266 kb on - strand at 542.266 kb on - strand at 542.284 kb on - strand at 542.318 kb on - strand at 542.378 kb on - strand at 542.487 kb on - strand, within ldtD
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 540,056 + aspC NIAGMN_03105 0.37 -0.5 540,316 + aspC NIAGMN_03105 0.59 -1.9 540,317 - aspC NIAGMN_03105 0.59 +2.8 540,800 + +2.8 540,844 - +1.2 540,889 - +0.5 540,889 - -0.9 540,889 - +0.4 540,937 - gloC NIAGMN_03110 0.13 -1.4 541,045 - gloC NIAGMN_03110 0.30 +0.7 541,104 + gloC NIAGMN_03110 0.39 -0.1 541,121 - gloC NIAGMN_03110 0.41 +1.8 541,121 - gloC NIAGMN_03110 0.41 -0.0 541,121 - gloC NIAGMN_03110 0.41 +0.0 541,130 - gloC NIAGMN_03110 0.43 -0.6 541,216 - gloC NIAGMN_03110 0.56 -0.4 541,494 - -0.4 541,500 + +0.5 541,526 - +1.8 541,526 - +1.1 541,529 - -0.7 541,529 - +2.4 541,557 - -0.4 541,557 - -1.8 541,569 - -0.5 541,569 - -0.1 541,569 - -0.3 541,580 - -1.9 541,588 - ycbK NIAGMN_03115 0.11 -1.9 541,604 + ycbK NIAGMN_03115 0.14 -1.9 541,605 - ycbK NIAGMN_03115 0.14 +0.7 541,609 - ycbK NIAGMN_03115 0.15 -0.3 541,609 - ycbK NIAGMN_03115 0.15 +1.9 541,813 - ycbK NIAGMN_03115 0.52 +0.9 541,895 - ycbK NIAGMN_03115 0.67 +0.3 542,088 + -3.0 542,108 + +1.6 542,109 - -0.2 542,110 + +2.3 542,111 - +1.4 542,111 - -1.3 542,249 - +0.7 542,266 - -1.4 542,266 - +1.8 542,284 - -2.3 542,318 - +0.4 542,378 - -0.2 542,487 - ldtD NIAGMN_03120 0.12 -1.6
Or see this region's nucleotide sequence