Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybbA and NIAGMN_02790 are separated by 351 nucleotides NIAGMN_02790 and NIAGMN_02795 are separated by 15 nucleotides NIAGMN_02795 and dnaC are separated by 21 nucleotides dnaC and NIAGMN_02805 are separated by 6 nucleotides
NIAGMN_02785: ybbA - iroE, at 480,709 to 481,482
ybbA
NIAGMN_02790: NIAGMN_02790 - DUF977 domain-containing protein, at 481,834 to 482,247
_02790
NIAGMN_02795: NIAGMN_02795 - DUF1627 domain-containing protein, at 482,263 to 483,033
_02795
NIAGMN_02800: dnaC - DNA replication protein DnaC, at 483,055 to 483,801
dnaC
NIAGMN_02805: NIAGMN_02805 - DNA-binding protein, at 483,808 to 484,899
_02805
Position (kb) 482
483
484 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 481.909 kb on + strand, within NIAGMN_02790 at 481.910 kb on - strand, within NIAGMN_02790 at 481.910 kb on - strand, within NIAGMN_02790 at 481.962 kb on + strand, within NIAGMN_02790 at 482.081 kb on - strand, within NIAGMN_02790 at 482.189 kb on - strand, within NIAGMN_02790 at 482.818 kb on - strand, within NIAGMN_02795 at 483.073 kb on - strand at 483.073 kb on - strand at 483.073 kb on - strand at 483.106 kb on - strand at 483.239 kb on - strand, within dnaC at 483.248 kb on - strand, within dnaC at 483.248 kb on - strand, within dnaC at 483.287 kb on - strand, within dnaC at 483.359 kb on + strand, within dnaC at 483.359 kb on + strand, within dnaC at 483.359 kb on + strand, within dnaC at 483.360 kb on - strand, within dnaC at 483.765 kb on + strand at 483.986 kb on + strand, within NIAGMN_02805
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 481,909 + NIAGMN_02790 0.18 +0.1 481,910 - NIAGMN_02790 0.18 +0.8 481,910 - NIAGMN_02790 0.18 -0.8 481,962 + NIAGMN_02790 0.31 +0.0 482,081 - NIAGMN_02790 0.60 -0.4 482,189 - NIAGMN_02790 0.86 +1.9 482,818 - NIAGMN_02795 0.72 -0.1 483,073 - -1.6 483,073 - -1.1 483,073 - +1.2 483,106 - +3.5 483,239 - dnaC NIAGMN_02800 0.25 +0.5 483,248 - dnaC NIAGMN_02800 0.26 +4.0 483,248 - dnaC NIAGMN_02800 0.26 -1.8 483,287 - dnaC NIAGMN_02800 0.31 +0.5 483,359 + dnaC NIAGMN_02800 0.41 +0.6 483,359 + dnaC NIAGMN_02800 0.41 -0.3 483,359 + dnaC NIAGMN_02800 0.41 -0.0 483,360 - dnaC NIAGMN_02800 0.41 +3.2 483,765 + -0.5 483,986 + NIAGMN_02805 0.16 -3.2
Or see this region's nucleotide sequence