Strain Fitness in Escherichia coli ECRC102 around NIAGMN_02780

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNIAGMN_02765 and NIAGMN_02770 are separated by 447 nucleotidesNIAGMN_02770 and NIAGMN_02780 are separated by 44 nucleotidesNIAGMN_02780 and ybbA are separated by 365 nucleotides NIAGMN_02765: NIAGMN_02765 - DUF968 domain-containing protein, at 478,452 to 479,501 _02765 NIAGMN_02770: NIAGMN_02770 - Hok/gef family, at 479,949 to 480,161 _02770 NIAGMN_02780: NIAGMN_02780 - hypothetical protein, at 480,206 to 480,343 _02780 NIAGMN_02785: ybbA - iroE, at 480,709 to 481,482 ybbA Position (kb) 480 481Strain fitness (log2 ratio) -2 -1 0 1at 480.133 kb on + strand, within NIAGMN_02770at 480.161 kb on + strandat 480.161 kb on + strandat 480.161 kb on + strandat 480.284 kb on + strand, within NIAGMN_02780at 480.300 kb on - strand, within NIAGMN_02780at 480.379 kb on - strandat 480.379 kb on - strandat 480.497 kb on + strandat 480.497 kb on + strandat 480.497 kb on + strandat 480.594 kb on + strandat 480.594 kb on + strandat 480.594 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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480,133 + NIAGMN_02770 0.86 -0.5
480,161 + +0.1
480,161 + +0.0
480,161 + -1.6
480,284 + NIAGMN_02780 0.57 -1.2
480,300 - NIAGMN_02780 0.68 -2.6
480,379 - -0.5
480,379 - -0.6
480,497 + -1.2
480,497 + -2.2
480,497 + +1.6
480,594 + -0.4
480,594 + +0.5
480,594 + -0.4

Or see this region's nucleotide sequence