Strain Fitness in Escherichia coli ECRC102 around NIAGMN_02535

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntespJ and tccP are separated by 324 nucleotidestccP and NIAGMN_02540 are separated by 125 nucleotidesNIAGMN_02540 and NIAGMN_02545 are separated by 1 nucleotides NIAGMN_02530: espJ - type III secretion system effector ADP-ribosyltransferase EspJ, at 444,162 to 444,815 espJ NIAGMN_02535: tccP - Tir-cytoskeleton coupling protein TccP, at 445,140 to 446,153 tccP NIAGMN_02540: NIAGMN_02540 - phage tail protein, at 446,279 to 446,548 _02540 NIAGMN_02545: NIAGMN_02545 - phage tail protein, at 446,550 to 447,863 _02545 Position (kb) 445 446 447Strain fitness (log2 ratio) -2 -1 0 1 2 3at 444.722 kb on + strand, within espJat 444.924 kb on + strandat 445.025 kb on + strandat 445.128 kb on - strandat 445.133 kb on - strandat 445.198 kb on - strandat 445.281 kb on - strand, within tccP

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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444,722 + espJ NIAGMN_02530 0.86 +3.1
444,924 + +0.0
445,025 + -0.3
445,128 - +2.7
445,133 - +3.0
445,198 - +2.1
445,281 - tccP NIAGMN_02535 0.14 -2.4

Or see this region's nucleotide sequence