Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt amyA and yedD are separated by 33 nucleotides yedD and yedE are separated by 186 nucleotides yedE and yedF overlap by 4 nucleotides yedF and yedK are separated by 108 nucleotides
NIAGMN_02295: amyA - alpha-amylase, at 404,266 to 405,753
amyA
NIAGMN_02300: yedD - lipoprotein, at 405,787 to 406,200
yedD
NIAGMN_02305: yedE - selenium metabolism membrane protein YedE/FdhT, at 406,387 to 407,592
yedE
NIAGMN_02310: yedF - sulfurtransferase-like selenium metabolism protein YedF, at 407,589 to 407,822
yedF
NIAGMN_02315: yedK - Abasic site processing protein YedK, at 407,931 to 408,599
yedK
Position (kb) 406
407
408 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 405.429 kb on + strand, within amyA at 405.630 kb on + strand at 405.630 kb on + strand at 405.671 kb on + strand at 405.871 kb on - strand, within yedD at 405.871 kb on - strand, within yedD at 405.879 kb on - strand, within yedD at 405.879 kb on - strand, within yedD at 405.879 kb on - strand, within yedD at 406.007 kb on - strand, within yedD at 406.337 kb on + strand at 406.475 kb on - strand at 406.590 kb on + strand, within yedE at 406.695 kb on - strand, within yedE at 406.735 kb on - strand, within yedE at 407.149 kb on - strand, within yedE at 407.154 kb on + strand, within yedE at 407.209 kb on + strand, within yedE at 407.213 kb on + strand, within yedE at 407.213 kb on + strand, within yedE at 407.273 kb on + strand, within yedE at 407.326 kb on + strand, within yedE at 407.326 kb on + strand, within yedE at 407.401 kb on + strand, within yedE at 407.805 kb on + strand at 407.821 kb on - strand at 407.870 kb on - strand at 407.912 kb on - strand at 407.931 kb on - strand at 407.931 kb on - strand at 408.037 kb on - strand, within yedK at 408.186 kb on - strand, within yedK at 408.186 kb on - strand, within yedK at 408.400 kb on + strand, within yedK
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 405,429 + amyA NIAGMN_02295 0.78 +3.3 405,630 + +0.0 405,630 + -1.1 405,671 + +0.8 405,871 - yedD NIAGMN_02300 0.20 +0.6 405,871 - yedD NIAGMN_02300 0.20 -0.5 405,879 - yedD NIAGMN_02300 0.22 +0.2 405,879 - yedD NIAGMN_02300 0.22 -1.0 405,879 - yedD NIAGMN_02300 0.22 +0.4 406,007 - yedD NIAGMN_02300 0.53 +0.2 406,337 + -0.6 406,475 - +0.1 406,590 + yedE NIAGMN_02305 0.17 -0.9 406,695 - yedE NIAGMN_02305 0.26 +1.1 406,735 - yedE NIAGMN_02305 0.29 -0.6 407,149 - yedE NIAGMN_02305 0.63 +1.0 407,154 + yedE NIAGMN_02305 0.64 -0.8 407,209 + yedE NIAGMN_02305 0.68 +3.0 407,213 + yedE NIAGMN_02305 0.68 -0.8 407,213 + yedE NIAGMN_02305 0.68 -1.1 407,273 + yedE NIAGMN_02305 0.73 -0.1 407,326 + yedE NIAGMN_02305 0.78 -0.3 407,326 + yedE NIAGMN_02305 0.78 -1.7 407,401 + yedE NIAGMN_02305 0.84 +0.8 407,805 + -2.0 407,821 - -1.3 407,870 - +2.1 407,912 - +0.3 407,931 - -0.9 407,931 - +0.2 408,037 - yedK NIAGMN_02315 0.16 +0.1 408,186 - yedK NIAGMN_02315 0.38 -0.1 408,186 - yedK NIAGMN_02315 0.38 -0.1 408,400 + yedK NIAGMN_02315 0.70 -0.8
Or see this region's nucleotide sequence