Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NIAGMN_02060 and NIAGMN_02065 are separated by 21 nucleotides NIAGMN_02065 and NIAGMN_02070 are separated by 10 nucleotides NIAGMN_02070 and NIAGMN_02075 are separated by 11 nucleotides NIAGMN_02075 and NIAGMN_02080 overlap by 4 nucleotides NIAGMN_02080 and NIAGMN_02085 are separated by 92 nucleotides NIAGMN_02085 and NIAGMN_02090 are separated by 23 nucleotides NIAGMN_02090 and marR overlap by 4 nucleotides
NIAGMN_02060: NIAGMN_02060 - DNA-binding protein, at 371,469 to 371,672
_02060
NIAGMN_02065: NIAGMN_02065 - DUF4761 domain-containing protein, at 371,694 to 372,044
_02065
NIAGMN_02070: NIAGMN_02070 - hypothetical protein, at 372,055 to 372,333
_02070
NIAGMN_02075: NIAGMN_02075 - DUF4754 domain-containing protein, at 372,345 to 372,587
_02075
NIAGMN_02080: NIAGMN_02080 - Membrane protein, at 372,584 to 372,697
_02080
NIAGMN_02085: NIAGMN_02085 - Phage protein, at 372,790 to 373,206
_02085
NIAGMN_02090: NIAGMN_02090 - hypothetical protein, at 373,230 to 373,433
_02090
NIAGMN_02095: marR - MarR family transcriptional regulator, at 373,430 to 373,696
marR
Position (kb) 372
373 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 371.478 kb on - strand at 371.508 kb on + strand, within NIAGMN_02060 at 371.512 kb on + strand, within NIAGMN_02060 at 371.526 kb on + strand, within NIAGMN_02060 at 371.537 kb on - strand, within NIAGMN_02060 at 371.537 kb on - strand, within NIAGMN_02060 at 371.543 kb on + strand, within NIAGMN_02060 at 371.555 kb on + strand, within NIAGMN_02060 at 371.589 kb on - strand, within NIAGMN_02060 at 371.630 kb on - strand, within NIAGMN_02060 at 371.752 kb on + strand, within NIAGMN_02065 at 371.753 kb on - strand, within NIAGMN_02065 at 371.780 kb on + strand, within NIAGMN_02065 at 371.783 kb on + strand, within NIAGMN_02065 at 371.784 kb on - strand, within NIAGMN_02065 at 371.793 kb on + strand, within NIAGMN_02065 at 372.565 kb on - strand at 373.148 kb on + strand, within NIAGMN_02085 at 373.205 kb on - strand at 373.262 kb on + strand, within NIAGMN_02090 at 373.351 kb on - strand, within NIAGMN_02090 at 373.368 kb on + strand, within NIAGMN_02090 at 373.368 kb on + strand, within NIAGMN_02090 at 373.368 kb on + strand, within NIAGMN_02090 at 373.517 kb on - strand, within marR
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 371,478 - -0.6 371,508 + NIAGMN_02060 0.19 -0.8 371,512 + NIAGMN_02060 0.21 +1.3 371,526 + NIAGMN_02060 0.28 +3.3 371,537 - NIAGMN_02060 0.33 -1.2 371,537 - NIAGMN_02060 0.33 +0.4 371,543 + NIAGMN_02060 0.36 +0.1 371,555 + NIAGMN_02060 0.42 -1.8 371,589 - NIAGMN_02060 0.59 -0.4 371,630 - NIAGMN_02060 0.79 +4.2 371,752 + NIAGMN_02065 0.17 +0.4 371,753 - NIAGMN_02065 0.17 -0.3 371,780 + NIAGMN_02065 0.25 +0.5 371,783 + NIAGMN_02065 0.25 +1.1 371,784 - NIAGMN_02065 0.26 -0.3 371,793 + NIAGMN_02065 0.28 -2.2 372,565 - +2.0 373,148 + NIAGMN_02085 0.86 -0.3 373,205 - +1.4 373,262 + NIAGMN_02090 0.16 -2.4 373,351 - NIAGMN_02090 0.59 -2.7 373,368 + NIAGMN_02090 0.68 +0.8 373,368 + NIAGMN_02090 0.68 +0.7 373,368 + NIAGMN_02090 0.68 -1.2 373,517 - marR NIAGMN_02095 0.33 +1.4
Or see this region's nucleotide sequence