Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yecJ and azuC are separated by 114 nucleotides azuC and yecR are separated by 261 nucleotides yecR and ftnA are separated by 170 nucleotides ftnA and yecH are separated by 36 nucleotides yecH and tyrP are separated by 191 nucleotides
NIAGMN_02005: yecJ - Uncharacterized protein YecJ, at 364,242 to 364,493
yecJ
NIAGMN_02010: azuC - stress response protein AzuC, at 364,608 to 364,694
azuC
NIAGMN_02015: yecR - Uncharacterized protein YecR, at 364,956 to 365,279
yecR
NIAGMN_02020: ftnA - non-heme ferritin, at 365,450 to 365,947
ftnA
NIAGMN_02025: yecH - Uncharacterized protein YecH, at 365,984 to 366,223
yecH
NIAGMN_02030: tyrP - tyrosine transporter TyrP, at 366,415 to 367,626
tyrP
Position (kb) 365
366 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 364.620 kb on - strand, within azuC at 364.620 kb on - strand, within azuC at 364.659 kb on - strand, within azuC at 364.659 kb on - strand, within azuC at 364.659 kb on - strand, within azuC at 364.668 kb on - strand, within azuC at 364.719 kb on - strand at 364.743 kb on - strand at 364.745 kb on - strand at 364.939 kb on - strand at 365.057 kb on - strand, within yecR at 365.106 kb on + strand, within yecR at 365.213 kb on - strand, within yecR at 365.447 kb on - strand at 365.546 kb on + strand, within ftnA at 365.552 kb on - strand, within ftnA at 365.608 kb on + strand, within ftnA at 365.656 kb on + strand, within ftnA at 365.659 kb on + strand, within ftnA at 365.706 kb on + strand, within ftnA at 365.789 kb on + strand, within ftnA at 366.164 kb on - strand, within yecH at 366.164 kb on - strand, within yecH at 366.358 kb on - strand at 366.519 kb on + strand at 366.559 kb on + strand, within tyrP at 366.569 kb on + strand, within tyrP at 366.606 kb on + strand, within tyrP at 366.634 kb on + strand, within tyrP at 366.683 kb on + strand, within tyrP at 366.683 kb on + strand, within tyrP at 366.684 kb on - strand, within tyrP at 366.688 kb on + strand, within tyrP at 366.688 kb on + strand, within tyrP at 366.688 kb on + strand, within tyrP at 366.706 kb on + strand, within tyrP at 366.706 kb on + strand, within tyrP at 366.759 kb on + strand, within tyrP at 366.915 kb on + strand, within tyrP
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 364,620 - azuC NIAGMN_02010 0.14 +1.3 364,620 - azuC NIAGMN_02010 0.14 +2.0 364,659 - azuC NIAGMN_02010 0.59 +0.5 364,659 - azuC NIAGMN_02010 0.59 -2.1 364,659 - azuC NIAGMN_02010 0.59 +1.0 364,668 - azuC NIAGMN_02010 0.69 -1.4 364,719 - -2.6 364,743 - +0.1 364,745 - -1.5 364,939 - -1.3 365,057 - yecR NIAGMN_02015 0.31 +2.2 365,106 + yecR NIAGMN_02015 0.46 +1.1 365,213 - yecR NIAGMN_02015 0.79 +0.3 365,447 - -0.6 365,546 + ftnA NIAGMN_02020 0.19 -0.2 365,552 - ftnA NIAGMN_02020 0.20 +0.0 365,608 + ftnA NIAGMN_02020 0.32 +0.7 365,656 + ftnA NIAGMN_02020 0.41 +1.5 365,659 + ftnA NIAGMN_02020 0.42 +1.5 365,706 + ftnA NIAGMN_02020 0.51 -0.3 365,789 + ftnA NIAGMN_02020 0.68 -0.6 366,164 - yecH NIAGMN_02025 0.75 -2.4 366,164 - yecH NIAGMN_02025 0.75 -0.6 366,358 - +1.0 366,519 + -2.5 366,559 + tyrP NIAGMN_02030 0.12 -0.0 366,569 + tyrP NIAGMN_02030 0.13 -0.2 366,606 + tyrP NIAGMN_02030 0.16 +1.2 366,634 + tyrP NIAGMN_02030 0.18 +0.1 366,683 + tyrP NIAGMN_02030 0.22 +2.6 366,683 + tyrP NIAGMN_02030 0.22 +0.9 366,684 - tyrP NIAGMN_02030 0.22 +0.4 366,688 + tyrP NIAGMN_02030 0.23 -0.7 366,688 + tyrP NIAGMN_02030 0.23 -0.5 366,688 + tyrP NIAGMN_02030 0.23 -3.4 366,706 + tyrP NIAGMN_02030 0.24 +0.7 366,706 + tyrP NIAGMN_02030 0.24 -2.0 366,759 + tyrP NIAGMN_02030 0.28 +0.1 366,915 + tyrP NIAGMN_02030 0.41 +1.7
Or see this region's nucleotide sequence