Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NIAGMN_01695 and yebF overlap by 87 nucleotides yebF and yebG are separated by 66 nucleotides yebG and purT are separated by 133 nucleotides purT and kdgA are separated by 55 nucleotides kdgA and edd are separated by 36 nucleotides
NIAGMN_01695: NIAGMN_01695 - hypothetical protein, at 307,327 to 307,533
_01695
NIAGMN_01700: yebF - Protein YebF, at 307,447 to 307,803
yebF
NIAGMN_01705: yebG - DNA damage-inducible protein YebG, at 307,870 to 308,160
yebG
NIAGMN_01710: purT - formate-dependent phosphoribosylglycinamide formyltransferase, at 308,294 to 309,472
purT
NIAGMN_01715: kdgA - bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase, at 309,528 to 310,169
kdgA
NIAGMN_01720: edd - phosphogluconate dehydratase, at 310,206 to 312,017
edd
Position (kb) 308
309
310 Strain fitness (log2 ratio) -2
-1
0
1
2 at 307.461 kb on - strand at 307.519 kb on - strand at 307.525 kb on + strand at 307.781 kb on - strand at 307.816 kb on - strand at 308.061 kb on + strand, within yebG at 308.079 kb on - strand, within yebG at 308.137 kb on + strand at 308.141 kb on + strand at 308.142 kb on - strand at 308.142 kb on - strand at 308.142 kb on - strand at 308.146 kb on - strand at 308.146 kb on - strand at 308.301 kb on + strand at 308.526 kb on - strand, within purT at 308.754 kb on + strand, within purT at 309.205 kb on - strand, within purT at 309.245 kb on + strand, within purT at 309.665 kb on - strand, within kdgA at 310.270 kb on - strand at 310.430 kb on - strand, within edd at 310.430 kb on - strand, within edd
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 307,461 - -1.7 307,519 - +0.4 307,525 + +1.8 307,781 - +2.5 307,816 - +1.0 308,061 + yebG NIAGMN_01705 0.66 -0.3 308,079 - yebG NIAGMN_01705 0.72 -0.8 308,137 + -1.0 308,141 + -0.4 308,142 - +1.3 308,142 - -1.1 308,142 - +0.9 308,146 - -0.4 308,146 - -0.7 308,301 + -0.7 308,526 - purT NIAGMN_01710 0.20 -2.0 308,754 + purT NIAGMN_01710 0.39 +0.7 309,205 - purT NIAGMN_01710 0.77 -0.8 309,245 + purT NIAGMN_01710 0.81 -0.7 309,665 - kdgA NIAGMN_01715 0.21 -0.7 310,270 - +0.7 310,430 - edd NIAGMN_01720 0.12 -0.0 310,430 - edd NIAGMN_01720 0.12 -0.7
Or see this region's nucleotide sequence