Strain Fitness in Escherichia coli ECRC102 around NIAGMN_01665

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcopD and yobA are separated by 3 nucleotidesyobA and holE are separated by 138 nucleotidesholE and yobB are separated by 101 nucleotidesyobB and exoX are separated by 23 nucleotides NIAGMN_01655: copD - copper homeostasis membrane protein CopD, at 301,132 to 302,004 copD NIAGMN_01660: yobA - CopC domain-containing protein YobA, at 302,008 to 302,382 yobA NIAGMN_01665: holE - DNA polymerase III subunit theta, at 302,521 to 302,751 holE NIAGMN_01670: yobB - Uncharacterized protein YobB, at 302,853 to 303,509 yobB NIAGMN_01675: exoX - exodeoxyribonuclease X, at 303,533 to 304,195 exoX Position (kb) 302 303Strain fitness (log2 ratio) -2 -1 0 1 2 3at 301.636 kb on - strand, within copDat 301.645 kb on - strand, within copDat 301.645 kb on - strand, within copDat 301.662 kb on + strand, within copDat 301.696 kb on + strand, within copDat 301.929 kb on - strandat 302.027 kb on + strandat 302.028 kb on - strandat 302.028 kb on - strandat 302.081 kb on + strand, within yobAat 302.081 kb on + strand, within yobAat 302.082 kb on - strand, within yobAat 302.082 kb on - strand, within yobAat 302.164 kb on - strand, within yobAat 302.283 kb on - strand, within yobAat 302.382 kb on + strandat 302.385 kb on + strandat 302.385 kb on + strandat 302.386 kb on - strandat 302.386 kb on - strandat 302.422 kb on + strandat 302.612 kb on - strand, within holEat 302.616 kb on + strand, within holEat 302.617 kb on - strand, within holEat 302.617 kb on - strand, within holEat 302.617 kb on - strand, within holEat 303.178 kb on - strand, within yobBat 303.454 kb on + strandat 303.658 kb on + strand, within exoXat 303.743 kb on + strand, within exoX

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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301,636 - copD NIAGMN_01655 0.58 -1.2
301,645 - copD NIAGMN_01655 0.59 +1.0
301,645 - copD NIAGMN_01655 0.59 +0.5
301,662 + copD NIAGMN_01655 0.61 -0.3
301,696 + copD NIAGMN_01655 0.65 +0.4
301,929 - +0.5
302,027 + +1.7
302,028 - +2.9
302,028 - +0.2
302,081 + yobA NIAGMN_01660 0.19 +0.1
302,081 + yobA NIAGMN_01660 0.19 +0.3
302,082 - yobA NIAGMN_01660 0.20 -2.0
302,082 - yobA NIAGMN_01660 0.20 +0.7
302,164 - yobA NIAGMN_01660 0.42 -1.3
302,283 - yobA NIAGMN_01660 0.73 -1.1
302,382 + +1.2
302,385 + +1.1
302,385 + +1.0
302,386 - +0.4
302,386 - -0.4
302,422 + -1.2
302,612 - holE NIAGMN_01665 0.39 -1.1
302,616 + holE NIAGMN_01665 0.41 +0.0
302,617 - holE NIAGMN_01665 0.42 -2.2
302,617 - holE NIAGMN_01665 0.42 +1.3
302,617 - holE NIAGMN_01665 0.42 +1.6
303,178 - yobB NIAGMN_01670 0.49 -1.3
303,454 + +1.3
303,658 + exoX NIAGMN_01675 0.19 +0.5
303,743 + exoX NIAGMN_01675 0.32 +0.2

Or see this region's nucleotide sequence