Strain Fitness in Escherichia coli ECRC102 around NIAGMN_01610

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntproQ and msrC are separated by 96 nucleotidesmsrC and yebS are separated by 75 nucleotidesyebS and yebT overlap by 32 nucleotides NIAGMN_01600: proQ - RNA chaperone ProQ, at 292,248 to 292,946 proQ NIAGMN_01605: msrC - L-methionine (R)-S-oxide reductase, at 293,043 to 293,594 msrC NIAGMN_01610: yebS - membrane integrity lipid transport subunit YebS, at 293,670 to 294,953 yebS NIAGMN_01615: yebT - lipid-binding membrane homeostasis protein YebT, at 294,922 to 297,555 yebT Position (kb) 293 294 295Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 292.739 kb on - strand, within proQat 292.757 kb on - strand, within proQat 292.777 kb on - strand, within proQat 292.917 kb on - strandat 292.932 kb on - strandat 293.005 kb on - strandat 293.007 kb on - strandat 293.029 kb on - strandat 293.029 kb on - strandat 293.187 kb on - strand, within msrCat 293.250 kb on - strand, within msrCat 293.250 kb on - strand, within msrCat 293.250 kb on - strand, within msrCat 293.382 kb on - strand, within msrCat 293.435 kb on - strand, within msrCat 293.435 kb on - strand, within msrCat 293.437 kb on - strand, within msrCat 293.437 kb on - strand, within msrCat 293.512 kb on - strand, within msrCat 293.512 kb on - strand, within msrCat 293.581 kb on - strandat 293.581 kb on - strandat 293.595 kb on + strandat 293.652 kb on + strandat 293.817 kb on + strand, within yebSat 293.818 kb on - strand, within yebSat 293.939 kb on + strand, within yebSat 293.975 kb on + strand, within yebSat 294.081 kb on + strand, within yebSat 294.085 kb on + strand, within yebSat 294.116 kb on - strand, within yebSat 294.197 kb on + strand, within yebSat 294.197 kb on + strand, within yebSat 294.198 kb on - strand, within yebSat 294.205 kb on + strand, within yebSat 294.213 kb on + strand, within yebSat 294.535 kb on - strand, within yebSat 294.561 kb on - strand, within yebSat 294.594 kb on - strand, within yebSat 294.673 kb on + strand, within yebSat 295.045 kb on + strandat 295.081 kb on - strandat 295.095 kb on + strandat 295.095 kb on + strandat 295.096 kb on - strandat 295.312 kb on + strand, within yebTat 295.496 kb on - strand, within yebT

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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292,739 - proQ NIAGMN_01600 0.70 +2.2
292,757 - proQ NIAGMN_01600 0.73 -1.9
292,777 - proQ NIAGMN_01600 0.76 -1.9
292,917 - -0.6
292,932 - -0.1
293,005 - -0.1
293,007 - +1.0
293,029 - +2.5
293,029 - +1.1
293,187 - msrC NIAGMN_01605 0.26 +0.4
293,250 - msrC NIAGMN_01605 0.38 -1.7
293,250 - msrC NIAGMN_01605 0.38 +2.2
293,250 - msrC NIAGMN_01605 0.38 -1.5
293,382 - msrC NIAGMN_01605 0.61 -1.0
293,435 - msrC NIAGMN_01605 0.71 +1.7
293,435 - msrC NIAGMN_01605 0.71 -2.8
293,437 - msrC NIAGMN_01605 0.71 +1.0
293,437 - msrC NIAGMN_01605 0.71 +2.4
293,512 - msrC NIAGMN_01605 0.85 +1.9
293,512 - msrC NIAGMN_01605 0.85 -1.5
293,581 - -1.7
293,581 - +1.8
293,595 + +0.4
293,652 + +3.1
293,817 + yebS NIAGMN_01610 0.11 -0.2
293,818 - yebS NIAGMN_01610 0.12 -1.2
293,939 + yebS NIAGMN_01610 0.21 +1.6
293,975 + yebS NIAGMN_01610 0.24 -1.1
294,081 + yebS NIAGMN_01610 0.32 +3.9
294,085 + yebS NIAGMN_01610 0.32 +0.6
294,116 - yebS NIAGMN_01610 0.35 -3.2
294,197 + yebS NIAGMN_01610 0.41 +1.1
294,197 + yebS NIAGMN_01610 0.41 -0.6
294,198 - yebS NIAGMN_01610 0.41 +0.7
294,205 + yebS NIAGMN_01610 0.42 +0.4
294,213 + yebS NIAGMN_01610 0.42 -1.7
294,535 - yebS NIAGMN_01610 0.67 +1.7
294,561 - yebS NIAGMN_01610 0.69 +1.7
294,594 - yebS NIAGMN_01610 0.72 +0.2
294,673 + yebS NIAGMN_01610 0.78 +1.0
295,045 + -2.3
295,081 - +1.0
295,095 + -0.9
295,095 + -0.9
295,096 - -0.3
295,312 + yebT NIAGMN_01615 0.15 -1.6
295,496 - yebT NIAGMN_01615 0.22 -0.2

Or see this region's nucleotide sequence